Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi532g00002 | ATGCAAATGATTCCTAATGACCCTTTTTCACTTTCCACTTCACTTCCTGCCTTTACTCAAGAACAAAACACAAACCCTAACCCTAAACCTAATACTCCTCCTGTCCCCAAGAAGAAGCGAAATCTTCCCGGAACACCAGATCCAGATGCCGAGGTTATTGCTCTTTCGCCGAAGACACTCATGGCAACAAACAGATTCATCTGTGAGATATGCAACAAAGGTTTTCAAAGAGATCAAAACCTTCAACTTCACAGAAGAGGTCACAACCTTCCATGGAAGCTTAGACAAAGATCAAACAAAGATGTTATCAAGAAGAAAGTTTACATCTGTCCAGAGAAGAGCTGTGTCCACCATGACCCTTCTAGAGCTCTTGGAGACCTCACTGGTATAAAAAAGCACTTCAGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCCAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACAAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGAAAGGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAAGAGAGTGCGAGGATAACTTCTGTTACGACAACGAATCTGAATTTCAAGAATGAAGAAGGTGCTGGTTCAATGATGGGTTCGCATTCGCATTCGCACTCACAATCACATTTACAACATGGTTTATCTCATGGAAATGGAATGCTTCAAAATATAGGTGGAGGAATTCCGCATCCGCAATTCGGTTCACAAGGATATCATGTAGATTTCAATGGAATTGGAAGCAACATTATGGAGAACCAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAATCCACATAATCAGATTCCTGAAATGGGACAAAGTTCAGGACTTTTTGGTTCATCAGGTTTATCTGAGATTGTTCAAATGGGAAATGCTAATATGAATAATAATGCCTTGATTGGTTCTTCATCATCAATGTTGTCTAGTTATGGTGTACCTGCTTCAAATTCATCACCTGCAAACCTTTCATTGTCTTCACTTCCAATAGGGAAAAGAGGAGAAAGTTCAACGAGTTCAGTTTATAATTCAGATGGTCAAAATAAGCAATTATCAAAGGCTGGTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCACTTCTAATAATAATAACCTCAACAACAATGGTTCTATTTTTAGTGCTAGTTTTGGTGTAATGACATCACCTTCTTCTTCTAATAGTAGTTTTGATCAGTTTCTGATGCATGGACAAGAAAGTGAACAAGGGAAGATGAATATCTTGCATCATGGTGGTAATTCAAATTCTATGGAACAAGTTCAGCATAGTAATTTGACTAGAGATTTTCTTGGTGTGAGTGGAACAAGTGGTCCTCCTCAGTTTCTACCTCAAGAGCTTGCAAAATTTGCTTCTTCCATTCAATTCACAGGAAACCAGTGA | 1509 | 0.393 | MQMIPNDPFSLSTSLPAFTQEQNTNPNPKPNTPPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVTTTNLNFKNEEGAGSMMGSHSHSHSQSHLQHGLSHGNGMLQNIGGGIPHPQFGSQGYHVDFNGIGSNIMENQQRPSLSLWLNQGNPHNQIPEMGQSSGLFGSSGLSEIVQMGNANMNNNALIGSSSSMLSSYGVPASNSSPANLSLSSLPIGKRGESSTSSVYNSDGQNKQLSKAGSATPMSATALLQKAAQMGSTRSTSNNNNLNNNGSIFSASFGVMTSPSSSNSSFDQFLMHGQESEQGKMNILHHGGNSNSMEQVQHSNLTRDFLGVSGTSGPPQFLPQELAKFASSIQFTGNQ | 502 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi532g00002 | 502 | Gene3D | Classic Zinc Finger | 121 | 200 | - | - | |
Vivi532g00002 | 502 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
Vivi532g00002 | 502 | SMART | c2h2final6 | 108 | 138 | IPR013087 | - | |
Vivi532g00002 | 502 | SMART | c2h2final6 | 143 | 163 | IPR013087 | - | |
Vivi532g00002 | 502 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
Vivi532g00002 | 502 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Vivi532g00002 | 502 | FunFam | protein indeterminate-domain 12-like | 45 | 114 | - | - | |
Vivi532g00002 | 502 | MobiDBLite | consensus disorder prediction | 355 | 383 | - | - | |
Vivi532g00002 | 502 | Pfam | Zinc-finger double-stranded RNA-binding | 66 | 88 | IPR022755 | - | |
Vivi532g00002 | 502 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 121 | 200 | - | - | |
Vivi532g00002 | 502 | Gene3D | Classic Zinc Finger | 44 | 119 | - | - | |
Vivi532g00002 | 502 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Vivi532g00002 | 502 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 482 | IPR031140 | - | |
Vivi532g00002 | 502 | MobiDBLite | consensus disorder prediction | 27 | 41 | - | - | |
Vivi532g00002 | 502 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 163 | IPR036236 | - | |
Vivi532g00002 | 502 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 88 | IPR013087 | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi532g00002 | 1 | 493 | IDZ Gene Family | AT5G03150 | 45.374 | 2.15e-134 | 397 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vivi532g00002 | zf-C2H2_jaz | 7.3e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi532g00002 | K25870 | - | gmx:100801182 | 540.036 |