Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi527g00034 ATGGTGTCAGGTGCTGGTGCTGGTGGTAGTGGTGGTCCGACGAAGTTCCTAGAGAAAACATACCATCTGGTTGATGATCCATCAACGGATGAAATAGTAGCCTGGAGTGAAAGTGAAAACAGTTTCATCGTTAAGGATGAAAGTAAATTGGTCAGCAATGTTCTTGATAAGTATTTCAAACACAGCAATTTCTCAAGTTTCATTCGTCAGCTCAATACCTATGGATTTCGCAAAATAAGTCATGATCAATGGGAGTTTTATAATCCATATTTTCGAAAAGATCAATATTATCTTCTTCGTAATATTCGCCGCAGGCAAGCGGTTCACAGTCACTCTCGTGTAGAAGTAGAAAGAATTGCATTTGAAGAAGAAATTGGGAAACTTGCTAATGAAAAAGCCTCCATTGAATTAGATATTTCTAGCTTCAATCAGTACATGCCAGCTAAAAAGCTTCATGTGGAAAATCTGGTGCATCGATTGGAAGCATCGGAGAATAGACATAACAATCTGAAGAACTCGTTTGAAATGGTTCTTCAAAATCCTAATTTGGTTGAAAAAATGAATGAGAAAGTTGAGTTCATTTTTTCTTCCGGATTTTCCAATAAGAGGTCTTTTGCTGCTGATGATTTGGGAAATCTAGTGGATAGATTTGTAGCATCAGAGAATAGCAACAATGAAGTTACCGAAGCTGGAAATAGTTTGGGTGATAATGATAGCGACTTTCCATTGATGGAAGTTGAGAATTATTTTGCTGACATTTATACCAATTTTGAATTTTGGGATTTTGAAGATATTTTGGGTGAGAATAATAGCAATTTTTAA 822 0.3625 MVSGAGAGGSGGPTKFLEKTYHLVDDPSTDEIVAWSESENSFIVKDESKLVSNVLDKYFKHSNFSSFIRQLNTYGFRKISHDQWEFYNPYFRKDQYYLLRNIRRRQAVHSHSRVEVERIAFEEEIGKLANEKASIELDISSFNQYMPAKKLHVENLVHRLEASENRHNNLKNSFEMVLQNPNLVEKMNEKVEFIFSSGFSNKRSFAADDLGNLVDRFVASENSNNEVTEAGNSLGDNDSDFPLMEVENYFADIYTNFEFWDFEDILGENNSNF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi527g00034 273 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00034 273 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00034 273 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00034 273 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 191 IPR027725 -
Vivi527g00034 273 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00034 273 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Vivi527g00034 273 FunFam Heat stress transcription factor B-4 9 106 - -
Vivi527g00034 273 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00034 273 Coils Coil 153 180 - -
Vivi527g00034 273 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00034 273 Gene3D - 11 106 IPR036388 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi527g00034 16 206 HSF AT4G13980 45.408 1.45e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi527g00034 HSF_DNA-bind 5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi527g00034 K09419 - vvo:131632794 231.106