Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi527g00031 ATGGAGGGTTCAACAACAAAATTAGGTGGTGGTGGTCATGGTGCTCCAACAAAGTTCCTAGTGAACACCTATCTGATGGTTGATGATCCATCCACCAATGAAATAATATCTTGGGGTCAAAACAACAAAAGTTTCATTATTAAAAACCCTAATGATATCTCTCGTCTTCTTCGCCAGTACTTCAAGCATTCCAATTTCTACAGCTTCGTCCGTCAGCTTAACATCTATGGATTCCGAAAAATAAAGCATGATCAATCGGAGTATGCTAATAAATATTTTCTAAAAGATCAACATCATCTTCTTGGTAATATTCGCCGCAAGAAAACTGTTCACAGTCGCTCTCATGGAGAATCAAAAAGGTTATCATTTGAGGCAGAAATTGAGAAACTTTCTAATGAAAAAGCCTCTGTTGAATCAAATATTTCTAGCTTCAAGCAAGAAATATCAGCTAGAAAGCTTCATGTGGGAAATCTAGAACGAAGATTAAAAGGAATTGAGAATAGACAAATGAACTTGAAGAATGCATTTGAAATGGTTATGCAGAATTCTAAATTTGTTGGAAAAGTTTATAAGAAAATTGATTCCTTACAATTTTCCAATAAAAGACCTTTTAATGCTGAAAATAGTTTTGTCGACGATGAAATGGATTATTGGAAAAGTTAG 663 0.3424 MEGSTTKLGGGGHGAPTKFLVNTYLMVDDPSTNEIISWGQNNKSFIIKNPNDISRLLRQYFKHSNFYSFVRQLNIYGFRKIKHDQSEYANKYFLKDQHHLLGNIRRKKTVHSRSHGESKRLSFEAEIEKLSNEKASVESNISSFKQEISARKLHVGNLERRLKGIENRQMNLKNAFEMVMQNSKFVGKVYKKIDSLQFSNKRPFNAENSFVDDEMDYWKS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi527g00031 220 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00031 220 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00031 220 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00031 220 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 189 IPR027725 -
Vivi527g00031 220 SMART hsfneu3 15 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00031 220 Coils Coil 155 175 - -
Vivi527g00031 220 Pfam HSF-type DNA-binding 19 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00031 220 Coils Coil 120 147 - -
Vivi527g00031 220 SUPERFAMILY "Winged helix" DNA-binding domain 16 107 IPR036390 -
Vivi527g00031 220 Gene3D - 13 109 IPR036388 -
Vivi527g00031 220 FunFam Heat stress transcription factor B-4 12 108 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi527g00031 19 199 HSF AT4G13980 45.455 1.74e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi527g00031 HSF_DNA-bind 7e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi527g00031 K09419 - vvo:131632794 442.58