Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi527g00028 ATGGAGGGTTCCTCGACTGAATCAAGTGGTGGTGATCCTGCACCATTCGTAGTGAAAACTTACGAGATGGTTGATGATTCCACTACGGATGATATGGTATCATGGAGTCCAACTAACAATAGTTTCATCGTCCGGAATCCTGATGAATTCTCTAGTCGTCTTCTTAGTCATTACTTCAAACATAACAATTTCTCCAGCTTCATCCGTCAGCTCAACACCTATGGATTTCACAAAATAAATCATGATCAATGGGAGTTTGCTAACGAATATTTTGTAAGAGATCAACGTCATCTTCTTATTAATATTCAACGCAAGAGAACTAATAACAATCACTCTGCTGGAGATCCAGAAAGGTTAGCATATGAGGAAGAAATTGAGAGACTTTCTAATGAAAATGCCGCTATTGAATCCAATATTTCTAGCTTGAAGCAACGCATCTCAGCTAGAAAGTTTCATATGGGGAATCTACAACAAAGATTAGATGGAATAGCGCTGAGGCAGAAAAACCTGCTGAACTCGTTTAATAGCGTTCTTCGGAATCCTAAAGCTGTTGAACGAATTTATGAGAAAATTGTGTCTGCAGAATTGATAGGATGTCACAAGAAAATGCGGTTTCCTCCTGTTGGAAATGAAGACGAAAAAGGTGCACATGATAAGGTTATAGGTGAAGGAGAGTTACCAAAAGAAATGCAGACAAAAGCAACTCCTGGATTTGTATCTGGCAAAGAGGGAAGTTTTGTCTCTTACTCTCCTTCAGACAATTCTACTACCTCAGAAGGTGAAAAAAGACTCCCCTCGGAACAAAAAAGTGAAGAAGGTGAAAAAAGACTCTCCTCAGAACAAAAAAGTGAAGAAAGTGATCATGATCAAACAAGCTGTCTTTCCAATCTAACTCTGATATCTTCTGCCAACGATAAGGAATCTGACGGCGGAGGAGCATTATCAAACAAGAATTCGGATGATGCTGTTACAAATTTAGCTTCCTCACAAAAGTCTCCTAGTCCTAGTAACAACCAAGAGATCAAGGCTGAGATGGTTTGA 1041 0.3929 MEGSSTESSGGDPAPFVVKTYEMVDDSTTDDMVSWSPTNNSFIVRNPDEFSSRLLSHYFKHNNFSSFIRQLNTYGFHKINHDQWEFANEYFVRDQRHLLINIQRKRTNNNHSAGDPERLAYEEEIERLSNENAAIESNISSLKQRISARKFHMGNLQQRLDGIALRQKNLLNSFNSVLRNPKAVERIYEKIVSAELIGCHKKMRFPPVGNEDEKGAHDKVIGEGELPKEMQTKATPGFVSGKEGSFVSYSPSDNSTTSEGEKRLPSEQKSEEGEKRLSSEQKSEESDHDQTSCLSNLTLISSANDKESDGGGALSNKNSDDAVTNLASSQKSPSPSNNQEIKAEMV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi527g00028 346 MobiDBLite consensus disorder prediction 290 346 - -
Vivi527g00028 346 MobiDBLite consensus disorder prediction 245 259 - -
Vivi527g00028 346 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00028 346 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00028 346 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00028 346 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00028 346 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00028 346 FunFam Heat stress transcription factor B-4 8 106 - -
Vivi527g00028 346 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 324 IPR027725 -
Vivi527g00028 346 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Vivi527g00028 346 Coils Coil 118 145 - -
Vivi527g00028 346 MobiDBLite consensus disorder prediction 260 289 - -
Vivi527g00028 346 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi527g00028 346 Gene3D - 10 106 IPR036388 -
Vivi527g00028 346 MobiDBLite consensus disorder prediction 222 346 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi527g00028 16 208 HSF AT4G13980 48.485 2.59e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi527g00028 HSF_DNA-bind 6.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi527g00028 K09419 - gmx:100816484 237.654