Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi527g00018 ATGTCTCCTCCAAAATCAAAGCTCAAAACCCTAGTTTCTCTCTCTAAACTCTTCCTTTCTTTCTCTCTCCTCCTTCACACCGCCATTGCCGATGACGGCGTTTTCATGTCAAAGCTCGCGAAATCACTTTCACCAACTCCGTCGGGGTGGACGACGGCGAGCTCATTTTGCAGCTGGAACGGCGTGAAATGCGATGATTCTAACCGCGTTACGTCCATCAACGTAGCTTCCAAGTCACTCACCGGAACCATACCTTCCGATCTGAACTCGCTTTCTGAACTCACGACAGTCTCTTTCCAGTCCAACTCGCTCGCCGGCGCGTTACCTTCACTTGCTAATCTATCTAATCTTCAATCGGTTTTTCTCAGTAGTAACAACTTTACTTCAATCCCCGATGGTTGTTTTCAGGGACTTACCAGTCTACAGAAACTTTCCATGACTGGAAACACCAACCTTAAACCATGGACGTTTCCTGCTGAGTTGACTCAGTCTTTGAATCTCGTTGAACTCGACCTTGGACAAACGAATCTCATTGGTTCCTTGCCGGATATATTCGCTCCATTGTTCAGTTTGCAGAAGCTTCGTCTTTCTTACAACAACCTCACCGGAGATTTACCGAACTCGTTTTCAGGATCTGGGATTCAGAACTTGTGGCTCAACAATCAGCAAGACGGGTCTGGGTTCACTGGCTCTCTCGATTTGCTTTCGACGATGTCCCACTTGACTCAAGTGTGGTTTCAGAAGAACAAGTTCACTGGCCCCATTCCTGATTTATCAAACTGTACTAATTTGTTTGATCTTCAGCTTCGCGATAATCAGTTAACAGGTGTTGTTCCGCATTCTTTGATGAGTTTAGCTAGTTTGACGAATGTTTCATTGGATAACAATAATTTGCAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTAGAGGTTGCTCCTAATGATGGGATCAATAGCTTTTGTAAAGACACTCCTGGACCTTGTGACCCGCGCGTTACTACTTTGCTTGATGTTGCTGCTGGTTTTGGGTATCCTCTTCAGTTGGCTAGTTCTTGGAAAGGGAATGATCCTTGTCTAGATTGGAGCTTTGTTGTGTGTTCTGGAGGGAAGATTATTACCGTGAACTTAGCTAAGCAGAAGTTGAATGGAACCATTTCGCCTGCATTTGGGAATTTAACTGATTTGAGGAATTTGTATCTGGGTGGGAACAACTTGTCTGGTTCCATACCGGGGAGCTTGACGGGTTTGACTCAACTTGAAGTTTTGGATGTGTCTAGCAACAATCTATCTGGAGAGATTCCTAAATTTTCTAATAAAGTGAAGTTCAATTCTGCTGGTAATGTTTTGCTTGGGCCTTCTGGAGGTGATAAGGGAAGTGGAACTACTCCGCCGAAGAGTCCTGGTGATGCACCAAGTGGAAGTCCATCGAGAAAGTCAGGTGGTTCTTCGCTGTCACCAGCTTGGATAGCAGGTATAGCTGTTATTGCTGTGTTTTTTGTTGCAGTGGTGTTGTTTGTGTTTTGTAAGTGTTATACTAAGAATCGGAGGCATGGGGAATTCGGGAGGGTTAATAATCCTGAAAATGGAAAAGGTGAGGTTAAACTTGATGTCATGAGTGTTTCCAATTCTAATGGATATGGTGGAGTTCCGAGTGAGTTACAGAGTCAGGGAAGTGAGCGTAGTGACAACCTTCAGGTTTTTGAGGGTGGAAATGTTACTATTTCAATCCAAGTTCTTAGGCAAGTCACCGGTAATTTCAGTGCAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAGATTGCTGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTTACTAAAGTTAGGCATAGACATTTGGTTGCTCTTCTAGGATTCTGCATTAATGGAAATGAAAGACTTTTGGTCTATGAGTATATGCCCCAAGGAACATTAACACAACACCTGTTTGATTGGGGTGAAAACGGATGTGCTCCTTTGACTTGGAAACAAAGAGTAGCAATAGCTTTGGATGTTGCACGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGAGACTTAAAACCCTCCAACATACTATTAGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCGGATGGAAAATATTCTGTTGAGACAAGGCTGGCAGGAACATTTGGATATTTGGCACCTGAATATGCAGCCACTGGAAGAGTGACGACCAAAGTAGATGTTTATGCATTTGGAGTAGTTCTGATGGAATTGATAACTGGTAGAAGGGCATTGGATGATACTATGCCTGATGAACGATCCCATTTGGTTTCATGGTTCCGCCGGGTACAAGTCAACAAGGAGAACATCCCCAAAGCAATCGATCAAACATTGAACCCCGACGAAGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTAGCTGGCCATTGCACTGCTCGTGAACCATACCAGAGGCCAGATATGGGACATGCAGTGAATGTCCTGGTTCCTCTGGTTGAGCAATGGAAGCCCACCAGTCATGAAGAAGAAGACGGTTATGGTATTGACCTTCACATGAGCCTCCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCCACGATGTTTAACGACACATCTTTCTCGCAAACCCAATCAAGTATTCCTGCAAAACCTTCCGGATTCGCCGACTCCTTTGACTCAATGGATTGCCGATAA 2805 0.4435 MSPPKSKLKTLVSLSKLFLSFSLLLHTAIADDGVFMSKLAKSLSPTPSGWTTASSFCSWNGVKCDDSNRVTSINVASKSLTGTIPSDLNSLSELTTVSFQSNSLAGALPSLANLSNLQSVFLSSNNFTSIPDGCFQGLTSLQKLSMTGNTNLKPWTFPAELTQSLNLVELDLGQTNLIGSLPDIFAPLFSLQKLRLSYNNLTGDLPNSFSGSGIQNLWLNNQQDGSGFTGSLDLLSTMSHLTQVWFQKNKFTGPIPDLSNCTNLFDLQLRDNQLTGVVPHSLMSLASLTNVSLDNNNLQGPFPSFGKGVEVAPNDGINSFCKDTPGPCDPRVTTLLDVAAGFGYPLQLASSWKGNDPCLDWSFVVCSGGKIITVNLAKQKLNGTISPAFGNLTDLRNLYLGGNNLSGSIPGSLTGLTQLEVLDVSSNNLSGEIPKFSNKVKFNSAGNVLLGPSGGDKGSGTTPPKSPGDAPSGSPSRKSGGSSLSPAWIAGIAVIAVFFVAVVLFVFCKCYTKNRRHGEFGRVNNPENGKGEVKLDVMSVSNSNGYGGVPSELQSQGSERSDNLQVFEGGNVTISIQVLRQVTGNFSADNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFQAEIAVLTKVRHRHLVALLGFCINGNERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVSWFRRVQVNKENIPKAIDQTLNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDGYGIDLHMSLPQALQRWQANEGTSTMFNDTSFSQTQSSIPAKPSGFADSFDSMDCR 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi527g00018 934 Pfam Protein tyrosine and serine/threonine kinase 589 860 IPR001245 GO:0004672|GO:0006468
Vivi527g00018 934 FunFam Leucine-rich repeat receptor-like kinase 330 453 - -
Vivi527g00018 934 SMART LRR_typ_2 392 415 IPR003591 -
Vivi527g00018 934 SMART LRR_typ_2 188 211 IPR003591 -
Vivi527g00018 934 SMART LRR_typ_2 114 137 IPR003591 -
Vivi527g00018 934 SMART LRR_typ_2 416 440 IPR003591 -
Vivi527g00018 934 Pfam Leucine Rich Repeat 190 210 IPR001611 GO:0005515
Vivi527g00018 934 MobiDBLite consensus disorder prediction 908 934 - -
Vivi527g00018 934 Gene3D Ribonuclease Inhibitor 330 452 IPR032675 -
Vivi527g00018 934 ProSitePatterns Protein kinases ATP-binding region signature. 592 614 IPR017441 GO:0005524
Vivi527g00018 934 MobiDBLite consensus disorder prediction 452 480 - -
Vivi527g00018 934 FunFam receptor protein kinase TMK1 664 881 - -
Vivi527g00018 934 SUPERFAMILY Protein kinase-like (PK-like) 566 862 IPR011009 -
Vivi527g00018 934 Gene3D Transferase(Phosphotransferase) domain 1 664 885 - -
Vivi527g00018 934 Pfam Leucine rich repeat 93 149 IPR001611 GO:0005515
Vivi527g00018 934 Pfam Leucine rich repeat 374 429 IPR001611 GO:0005515
Vivi527g00018 934 CDD STKc_IRAK 592 865 - -
Vivi527g00018 934 Gene3D Phosphorylase Kinase; domain 1 550 663 - -
Vivi527g00018 934 SUPERFAMILY L domain-like 35 438 - -
Vivi527g00018 934 ProSiteProfiles Leucine-rich repeat profile. 116 137 IPR001611 GO:0005515
Vivi527g00018 934 FunFam Receptor-like kinase TMK4 30 326 - -
Vivi527g00018 934 ProSiteProfiles Protein kinase domain profile. 586 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi527g00018 934 Gene3D Ribonuclease Inhibitor 33 328 IPR032675 -
Vivi527g00018 934 FunFam receptor protein kinase TMK1 548 663 - -
Vivi527g00018 934 PANTHER OSJNBA0070M12.3 PROTEIN 17 934 - -
Vivi527g00018 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Vivi527g00018 934 Pfam Leucine rich repeat N-terminal domain 333 367 IPR013210 -
Vivi527g00018 934 Pfam Leucine rich repeat N-terminal domain 39 65 IPR013210 -
Vivi527g00018 934 SMART serkin_6 586 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi527g00018 70 877 Receptor kinase-like Gene Family AT1G55610 30.572 7.05e-95 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi527g00018 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi527g00018 K00924 - gmx:100781851 1481.08