Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi526g00010 | ATGTACCCTCAACCACACTACCAATCTCAACCCTTCGATTCACACCAACAAGAACAGCAGCAACAACAACAACAACCCTACTATTCGTTTTTCCCTCCCACTTCAGATTCCTCGCTTCATCCTCCCGGCACTAACCCAATTGCAAATTCAGCACCTTTTTCTGCTTACGCCTCCCAAACAGCAGATTATCCGAATTGGGTCGCTCAACAATCTGAACCTATCGCTTACGATCTTGGCAATGCTGTTGGTTCTGCATACGAGGCTTCTGCGCCGTCTGCGTGGAATGCTACATGGCCACATCAAATTTATGGCAATGAAACTACAACAATGATGCCTAACCAAACCAAATTCACCCAAGCATTGAGGTGTGAAGTGTGTAAAATTGATGTCAATAGCAAAGATTCATATGAAAAGCACGTAGCTGGAAAGAAACACCAGAAGAATTTACAAATTGGCGCAAGCATCCAAGGACAAGCGTTAATTGGTCCTGTAGTCCTGCAATCAGCGACTAATAAACAGGTGGAACAGTCAAGGGTTTGCACAACTTGCAATGTTTTGTGCACAAGTCACGACACATATATCAAACATATTGCTGGGAAAAAGCACGCAGCTCAGGTTTGCTTGATGTCTAATGGCGGCATTGGTCCATCTATTGCCGAATTCAAGCGTATTGGAGTTCCTCCGTTTCAAAAAGCCGCTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAACATGTAAGATTAATTGTAACAGCAGGGATATGTACATTACACACTTAGCCGGAAAGAAACACTTGAAGAACTTGGAGAAACTGTCGAATCCGAAAATCGACGTTGGCACAAGTACTGCTGCCACTGCGACAATTACTTTAATCGGACCACAGGCAAAGCCAGGCACCGATAAACCAAAAGCAAAGAAGGCATCGGAACTCGATATCGAGTCAAAGAAACGTAAAGTTGTGGAAGGAGGAGCTGCGGTTAATAATGTTAAAACATGTACTTTATGCAATGTGGTGTGTAATAGCGAGACAGTTTTCAATTTGCACCTTGTTGGGCTGAAGCATGCTGCAATGGTGAAGAAAGCAGGATCAAGCACTGGTTGA | 1107 | 0.4372 | MYPQPHYQSQPFDSHQQEQQQQQQQPYYSFFPPTSDSSLHPPGTNPIANSAPFSAYASQTADYPNWVAQQSEPIAYDLGNAVGSAYEASAPSAWNATWPHQIYGNETTTMMPNQTKFTQALRCEVCKIDVNSKDSYEKHVAGKKHQKNLQIGASIQGQALIGPVVLQSATNKQVEQSRVCTTCNVLCTSHDTYIKHIAGKKHAAQVCLMSNGGIGPSIAEFKRIGVPPFQKAAKKIKVAQSAWCETCKINCNSRDMYITHLAGKKHLKNLEKLSNPKIDVGTSTAATATITLIGPQAKPGTDKPKAKKASELDIESKKRKVVEGGAAVNNVKTCTLCNVVCNSETVFNLHLVGLKHAAMVKKAGSSTG | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi526g00010 | 368 | Gene3D | Classic Zinc Finger | 229 | 273 | - | - | |
| Vivi526g00010 | 368 | Gene3D | Classic Zinc Finger | 306 | 363 | - | - | |
| Vivi526g00010 | 368 | Gene3D | Classic Zinc Finger | 105 | 151 | - | - | |
| Vivi526g00010 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 327 | 362 | IPR036236 | - | |
| Vivi526g00010 | 368 | PANTHER | ZINC FINGER RNA-BINDING PROTEIN | 169 | 282 | - | - | |
| Vivi526g00010 | 368 | SMART | c2h2final6 | 178 | 202 | IPR013087 | - | |
| Vivi526g00010 | 368 | SMART | c2h2final6 | 121 | 145 | IPR013087 | - | |
| Vivi526g00010 | 368 | SMART | c2h2final6 | 242 | 266 | IPR013087 | - | |
| Vivi526g00010 | 368 | SMART | c2h2final6 | 332 | 356 | IPR013087 | - | |
| Vivi526g00010 | 368 | Gene3D | Classic Zinc Finger | 166 | 213 | - | - | |
| Vivi526g00010 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 170 | 206 | IPR036236 | - | |
| Vivi526g00010 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 240 | 273 | IPR036236 | - | |
| Vivi526g00010 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 100 | 150 | IPR036236 | - | |
| Vivi526g00010 | 368 | Pfam | Zinc-finger of C2H2 type | 180 | 202 | - | - | |
| Vivi526g00010 | 368 | Pfam | Zinc-finger of C2H2 type | 243 | 266 | - | - | |
| Vivi526g00010 | 368 | Pfam | Zinc-finger of C2H2 type | 122 | 145 | - | - | |
| Vivi526g00010 | 368 | Pfam | Zinc-finger of C2H2 type | 333 | 356 | - | - | |
| Vivi526g00010 | 368 | SMART | ZnF_U1_5 | 329 | 363 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi526g00010 | 368 | SMART | ZnF_U1_5 | 118 | 152 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi526g00010 | 368 | SMART | ZnF_U1_5 | 239 | 273 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi526g00010 | 368 | SMART | ZnF_U1_5 | 175 | 209 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi526g00010 | 368 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi526g00010 | 165 | 363 | C2H2 Transcription Factor Family | AT5G61190 | 27.638 | 7.23e-18 | 83.6 |