Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi526g00006 ATGGAAGAAGATCAAGAAGTGATTAAGCACGTTTGCAGAATCTGCTGCAAGAGTTTTCCTTGTGGTAGATCATTAGGTGGTCACATGAGGTCACATGATCATGACCATGATGATCATGATGATGATGGTGATGAGAGTTTTGTTGTTGTTTCTGCTTCAACAACAGTGAAGAAAGAAGAAGGTTGTTCTGAAGGGTATTATGGTCTTAGAGAGAATCCAAAGAAAACTTGGAGAGCACTCAATGATTCAACTAGTGATGATCAAGAGGAAGCTTTTGATGTTGTTTTGGACAAATTGTGCAAGGAATGTGGTAGAGGGTTTCAGTCTTGGAAAGCTTTATTCGGTCACATGAAGTGTCATTCGAGTAGTAAGAACAATGGTTTTGAGTTGGATGAACAAGAGTCTAACACTGATGCTTCTGCTGCTGCTGTTCTTCCGAGTAGAAAGAGAAGATCGAAAAGACGATTGAAAACAAGGTATGTAAATGGTAAGAGCTCTTCTTCTGTTGTGAGTTTTGCTGCGAATTCGGTTTCTGAGGAGGATGAACATGAACAAGAAGAGGTTGCTATGAGTTTGATGATGCTTAGTAGAGATGTAAGATCTTGGTCTGGTCTCAATTCTATTGCTGAATCTTCTGATAATGATGATAATGATGATAACAAGTCTGTGGAATTAGAAGCGCCGTTAACTCGTTTAGTTTCATCGAATCTTGAGTCCAAAGAGAAAAGCTTAGAAATTTTTGATGATGGATTGAAGATGAAGAAAACAAGAGTTTCTGTTAAGGATAAGATGAAGATTGAGGTTGATTCTGATTCAGCATTTGAGGTCAATGTAAGATCAAAACCAGGTACTAGTAGCACTAGTAAAGCTAAGTATACTTCAATGAAGGAAAATTTTTATGATTGTGAAAACAAGGTTTCATCGGAAGCTGAAATCGCCGCGAAAAAGTCTCGTAAGAGGGGAAAATTCGAGTGTGCTACTTGCAACCGAGTTTTTCATTCGTATCAAGCTCTTGGAGGTCATAGAGCTGGTCACAAGAGAAGCAAAGGATGTTTTGCTTTAAAGATTGATCAAAACAGTGAAAATGAAAGCAATGCTGAAGTAGATAAGAAGATCAATGTTTCTGATGAGGGAAGAGTCTTAGAAAGCGAAGGCGTTGTCGAAGAAGTCGAAGAAGTTCCGGAAATAAGGAACTTCCTTGATCTTAATCTTCCTGCTGATGCAAGTATTGTTGATGAAAGAAATGGTCATTCTGAGATTTACACACCATGGTGGTTAGATGGAAGTAACTTCAAGCAAGAGTCAATGGTAGGTCTACTATCAAACTAG 1329 0.3845 MEEDQEVIKHVCRICCKSFPCGRSLGGHMRSHDHDHDDHDDDGDESFVVVSASTTVKKEEGCSEGYYGLRENPKKTWRALNDSTSDDQEEAFDVVLDKLCKECGRGFQSWKALFGHMKCHSSSKNNGFELDEQESNTDASAAAVLPSRKRRSKRRLKTRYVNGKSSSSVVSFAANSVSEEDEHEQEEVAMSLMMLSRDVRSWSGLNSIAESSDNDDNDDNKSVELEAPLTRLVSSNLESKEKSLEIFDDGLKMKKTRVSVKDKMKIEVDSDSAFEVNVRSKPGTSSTSKAKYTSMKENFYDCENKVSSEAEIAAKKSRKRGKFECATCNRVFHSYQALGGHRAGHKRSKGCFALKIDQNSENESNAEVDKKINVSDEGRVLESEGVVEEVEEVPEIRNFLDLNLPADASIVDERNGHSEIYTPWWLDGSNFKQESMVGLLSN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi526g00006 442 SMART c2h2final6 98 120 IPR013087 -
Vivi526g00006 442 SMART c2h2final6 323 345 IPR013087 -
Vivi526g00006 442 SMART c2h2final6 10 32 IPR013087 -
Vivi526g00006 442 MobiDBLite consensus disorder prediction 130 156 - -
Vivi526g00006 442 SUPERFAMILY beta-beta-alpha zinc fingers 99 345 IPR036236 -
Vivi526g00006 442 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 370 - -
Vivi526g00006 442 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Vivi526g00006 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 323 350 IPR013087 -
Vivi526g00006 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Vivi526g00006 442 Pfam C2H2-type zinc finger 10 32 - -
Vivi526g00006 442 Pfam C2H2-type zinc finger 323 347 - -
Vivi526g00006 442 Pfam C2H2-type zinc finger 100 122 - -
Vivi526g00006 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Vivi526g00006 442 ProSitePatterns Zinc finger C2H2 type domain signature. 325 345 IPR013087 -
Vivi526g00006 442 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi526g00006 9 215 C2H2 Transcription Factor Family AT1G26610 40.724 8.97e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi526g00006 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi526g00006 - - vvo:131632756 813.142