Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi518g00005 ATGGGAAAGAAAAAGACAGAGGCTAAAGCAAGTAGCAAAGATGTTTCTAAGAAGGAAAAATTTTCTGTCTCTGCCAAGTTGGCCAGTATGCCTGAAAAGGCATCTTCTTCGAATAAGCCGAAGCCGAAACCTGCTCCAAAAGCTTCTACATACATTGATGATATTGATCTTCCAACCTCTGATGATGACGATGATGATTCCGAAGAGGAGTTAGAGCAAAAGCATAGGCCTGATGTGAAGCCTCTTGAGTTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGCGAAAAGAAAGATATTTTAGCGGCCCATGTGGCTGAGCAGGCAAGGAAAGAAGCTCTTAGGGATGATCGTGATGCGTTCACTGTTGTCATTGGAAGTCGGACTTCGGTGCTTGATGGAGATGATGACGCTGACGCTAATGTTAAGGATATAACAATAGAGAATTTTTCTGTGTCTGCTCGAGGTAAAGAGCTTCTGAGAAATGCATCGGTGAAGATATCTCATGGAAAGCGGTATGGTTTGGTTGGACCGAATGGAATGGGCAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTGCCTAAGAATATTGATGTGCTTCTGGTTGAGCAGGAGGTGGTTGGGGATGATAAAACAGCGCTAGAAGCCGTCGTTTCAGCCAATGCAGAACTTGTTAAAGTTCGACAAGAAGCTTCAGATTTACAGACTGCTGCTTCTGGCAAAGAGGGTGTGGATAAAGATGATGATAGTAACGAGGGTGAGGATGTCGGAGAAAAGCTCGCAGAGCTGTATGAGAAATTACAACTGATGGGGTCTGATGCTGCTGAACCTCAAGCGTCAAAGATTTTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACGAAATCCTTTAGTGGTGGGTGGAGGATGAGAATTTCATTAGCTCGAGCACTTTTCGTTCAGCCCACTTTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTATGGTTGGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTAGTTGTATCGCACGACAGGGATTTCCTCAATACTGTATGCTCAGAAATTATTCACCTGCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGAGTGGGTATGAACAGCGTCGTAGAGAGGTGAATAAGAAGTATGAGATTTATGACAAGCAAATGAAAGCAGCTAGAAGGACTGGAAACAAGGCTCAACAAGATAAGGTGAAGGATCGAGCTAAGTTTGCAGCTGCTAAGGAAGCGTCGAAAAGCAAAAGTAAGGGAAAGGGTGATGAGGATGAGGCCCAAGTAGAGGTACCGCACAAGTGGAGAGACTACAGCGTGGCGTTCCACTTTCCCGAACCTACCGAGCTCACACCTCCACTGCTGCAGGTTATTAATGTGAGCTTTAGCTATCCAAACCGAGAGGATTTCAGACTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCTTTGTTGGGCCTAACGGAGCTGGAAAATCTACACTGCTAAATCTTTTAGCCGGTGATTTGAATCCAAAGGAAGGTGAAGTTCAAAGGAGTCAGAAGTTGAGAATAGGAAGATACTCCCAACATTTTGTGGACCTACTGACGATGGACGAAACACCTGTTCAGTACCTCCTTCGCCTCCACCCAGACCAGGAGGGGCTTAGTAAGCAGGAGGCCGTCCGTGCAAAACTTGGCAAATTTGGGCTACCTAGTCATAATCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAATCTCGGGTCGTTTTCACGTCCATATCCATGTCAAGACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCGTTGGCCGATGCGCTGGATGAATTCACAGGTGGAGTTATTCTTGTTAGTCACGATTCTAGATTGATATCACGGGTCTGTGATGATGATGAAAGGAGTCAAATTTGGATTGTTGAGGATGGCACTGTCAGAATTTTCCCCAAAACATTTGAAGATTACAAGGAAGGTTTGCTGAAAGTGATTAAAGCTGAAGTTGATGATTGA 2118 0.441 MGKKKTEAKASSKDVSKKEKFSVSAKLASMPEKASSSNKPKPKPAPKASTYIDDIDLPTSDDDDDDSEEELEQKHRPDVKPLELSIAEKELKKREKKDILAAHVAEQARKEALRDDRDAFTVVIGSRTSVLDGDDDADANVKDITIENFSVSARGKELLRNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANAELVKVRQEASDLQTAASGKEGVDKDDDSNEGEDVGEKLAELYEKLQLMGSDAAEPQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDLKLHFYRGNFDAFESGYEQRRREVNKKYEIYDKQMKAARRTGNKAQQDKVKDRAKFAAAKEASKSKSKGKGDEDEAQVEVPHKWRDYSVAFHFPEPTELTPPLLQVINVSFSYPNREDFRLSDVDVGIDMGTRVAFVGPNGAGKSTLLNLLAGDLNPKEGEVQRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKSRVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVILVSHDSRLISRVCDDDERSQIWIVEDGTVRIFPKTFEDYKEGLLKVIKAEVDD 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi518g00005 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 478 703 IPR003439 GO:0005524
Vivi518g00005 705 Pfam ABC transporter 495 630 IPR003439 GO:0005524
Vivi518g00005 705 Coils Coil 395 415 - -
Vivi518g00005 705 Gene3D - 444 702 IPR027417 -
Vivi518g00005 705 CDD ABCF_EF-3 478 680 - -
Vivi518g00005 705 FunFam ABC transporter F family member 4 142 427 - -
Vivi518g00005 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 689 IPR027417 -
Vivi518g00005 705 CDD ABCF_EF-3 144 376 - -
Vivi518g00005 705 MobiDBLite consensus disorder prediction 411 451 - -
Vivi518g00005 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 407 IPR027417 -
Vivi518g00005 705 Pfam ABC transporter 159 331 IPR003439 GO:0005524
Vivi518g00005 705 MobiDBLite consensus disorder prediction 1 83 - -
Vivi518g00005 705 MobiDBLite consensus disorder prediction 1 21 - -
Vivi518g00005 705 FunFam ABC transporter F family member 4 443 705 - -
Vivi518g00005 705 Gene3D - 141 427 IPR027417 -
Vivi518g00005 705 SMART AAA_5 168 375 IPR003593 GO:0016887
Vivi518g00005 705 SMART AAA_5 504 680 IPR003593 GO:0016887
Vivi518g00005 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 144 399 IPR003439 GO:0005524
Vivi518g00005 705 Coils Coil 220 240 - -
Vivi518g00005 705 MobiDBLite consensus disorder prediction 238 258 - -
Vivi518g00005 705 ProSitePatterns ABC transporters family signature. 303 317 IPR017871 GO:0005524|GO:0016887
Vivi518g00005 705 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 117 697 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi518g00005 482 681 Calmodulin-binding Proteins AT2G36910 28.311 1.57e-11 66.2