Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi518g00004 ATGGCATCTTCAAGCGTATACTCAAACTCACCATGTGCAGCGTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTTCCACCAGAAGAACCACAGAAATTCGCAAACGTTCACAAAATATTTGGTGCAAGCAACGTGAGTAAACTTCTGAATGAAGTTCAACCTCATCAAAGAGAAGATGCAGTCAACTCTCTTGCCTATGAAGCTGAGGCAAGAATTAAAGATCCTGTTTATGGTTGTGTTGGTGCTATTTCAGTCCTCCAAAGACAAGTTATTAGTCTCCAAAAGGAACTCGATTCTACTAATGCCGATTTGATTCGCTATACTCAAATATTACCAAATCCTCAAGAACATGGAGGACCTTCTTCTCCTCCTCCTCCTCCACCACCTTTTTACTGTCCTTCACCTTGGAACAATAATGATCCACTAGGGGAAGCTTATCACACAAGTGGAGGTGGTGACAATATGTGA 489 0.4151 MASSSVYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVISLQKELDSTNADLIRYTQILPNPQEHGGPSSPPPPPPPFYCPSPWNNNDPLGEAYHTSGGGDNM 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi518g00004 162 Coils Coil 90 110 - -
Vivi518g00004 162 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vivi518g00004 162 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vivi518g00004 162 MobiDBLite consensus disorder prediction 118 162 - -
Vivi518g00004 162 MobiDBLite consensus disorder prediction 124 142 - -
Vivi518g00004 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 123 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi518g00004 5 118 AS2 family AT3G27650 82.456 8.27e-69 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi518g00004 LOB 8.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi518g00004 - - gmx:100306630 253.062