Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi517g00011 ATGGGCGATCAAAACCTAAACCTACCGGTCACTATATCATTGAGTTCAACCCAAAATGGATCAGAAACCACCAACAATGCTAACAACACCGTCGTAAGGGAAGTTATTGAGATTGATGCCGGTTCAGACACCGGAGAAAAATCCGAACCTAAAAGTATAGGTTCGGACACTCGGGTGAAAAGGCCGAGAGGTAGGCCTAGGAAGTACCAGGTTGGTGAGAACAAGTCGCCTATGATGTCCGTGTTAGGGTCGGGGTCATCTGAGCTAGCTATTCAGCCTTTTGGAAGTGAAGTGAAACGTGGAAGAGGTCGTCCTCGTGGTTCTGGAAAACTTCAGATTTTGGCTTCTATTGGTGGATGTGTTGCTGAAACTGCTGGAGGAAGTATGACACCTCATGTGCTGACTGTGAACCCTGGAGAGGATGTGGTTGGAAAAATATTTACATTTTTTCATAAATGTCCTAGAGGAGCTGTTTGCATACTTTCTGCTGCAGGTTGTGTGTCAACTGTCATCCTTCGTCAAACTGGAGGGGGCTCTTTAAGATATGAGGGTCACTTTCAGATTTTATCTTTAACTGGATCATGCACCTTCACTAGTGGTGGTGCTGGTGGTGCAGAGAGGAAAATTGGCACGTTGAGTGTTTCATTGGCTAAATCTGATGGAACAGTTTTTGGAGGTGGTGTTGAGAGCTCATTGATAGCTGCTACTCCAATTCAACTTATTTTGGCGACATTCAAGCAAAACATAAGCAACCAAATCAAGAGAAAGTACTCATCTCCAACTTCAACAACTGTTCCAAACATGGTGACTAATCAAGATTCATCCAGTGATAATAACTTGAAAGTTCCGAGGTTAACCCTAGAAGGAGAACCAAGCTGCCTGAGAGCAACAGCAACAAAGAAAACTAATGATGTAACAGTAGCAGTAGCGGATGATAAAGTGAAAGGTGAAACAACAACTAATGGTCAATCTGATTCTGTTGGTGATGGAGTTATTGACCTTGACAGCCAGACAATGGAGCCTGTTAATGCTAACAGTGTACCTTAA 1047 0.4346 MGDQNLNLPVTISLSSTQNGSETTNNANNTVVREVIEIDAGSDTGEKSEPKSIGSDTRVKRPRGRPRKYQVGENKSPMMSVLGSGSSELAIQPFGSEVKRGRGRPRGSGKLQILASIGGCVAETAGGSMTPHVLTVNPGEDVVGKIFTFFHKCPRGAVCILSAAGCVSTVILRQTGGGSLRYEGHFQILSLTGSCTFTSGGAGGAERKIGTLSVSLAKSDGTVFGGGVESSLIAATPIQLILATFKQNISNQIKRKYSSPTSTTVPNMVTNQDSSSDNNLKVPRLTLEGEPSCLRATATKKTNDVTVAVADDKVKGETTTNGQSDSVGDGVIDLDSQTMEPVNANSVP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi517g00011 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 249 - -
Vivi517g00011 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 IPR039605 GO:0003680
Vivi517g00011 348 MobiDBLite consensus disorder prediction 257 280 - -
Vivi517g00011 348 MobiDBLite consensus disorder prediction 1 32 - -
Vivi517g00011 348 SMART AT_hook_2 99 111 IPR017956 GO:0003677
Vivi517g00011 348 SMART AT_hook_2 60 72 IPR017956 GO:0003677
Vivi517g00011 348 MobiDBLite consensus disorder prediction 1 78 - -
Vivi517g00011 348 MobiDBLite consensus disorder prediction 39 70 - -
Vivi517g00011 348 Pfam AT hook motif 60 71 IPR017956 GO:0003677
Vivi517g00011 348 Pfam AT hook motif 99 109 IPR017956 GO:0003677
Vivi517g00011 348 MobiDBLite consensus disorder prediction 314 348 - -
Vivi517g00011 348 ProSiteProfiles PPC domain profile profile. 126 271 IPR005175 -
Vivi517g00011 348 CDD DUF296 130 245 IPR005175 -
Vivi517g00011 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 246 IPR005175 -
Vivi517g00011 348 Gene3D - 131 269 - -
Vivi517g00011 348 MobiDBLite consensus disorder prediction 316 331 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi517g00011 56 256 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 44.019 3.88e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi517g00011 - - mtr:25492323 397.512