Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi517g00010 ATGGAGCAGCCTGTTCCGAGATCGAGGGGCCGTCCGAGGAAACGGAGAAAGGAGGACGAGAAGGACGGAAAATCTGTTCCGGACGCGAAGAGGCAAGCCGTGGAAAGAAAACCAATAGCATTGGTTGGTAGGTATGTCCGGAAGAAGTTCCCTAGGAATGGTGTTTTTCTAGGGAAAGTAGTGTATTACGAAAGCGGTTTATATAGAGTCATTTACGAGGACGGTGACTTTGAGGATTTGGAGAGTGGGGAAATCCGGCCGATTCTTGTAAGTGACGCTGTTGATTTTGACGTTGGTATGTCAAAGAGGAAGACGAAATTAGAGAAGTTGGTTTTGCAGAATAGGGCTAAGGCTGCAGATGTGGCTGATACGGGTTCACCCAAATCCGTGAAAGAGGAATCTGCTGTTGATGTGACTGGTCCTAGTGAAATGGATGGTGGGTTATCAGTTGAAAATGATAAGGACGTGGAAGAGGATGATGGGGCTGATGATGATCTCTCAAGTGTCTCTGTTTCTGATGCTGAGATGGTGCCTTTGCCACCGCCGCTGTTGTTGCCACATTCATCTGGAACTATTGGTGTGCCAGAGTTGAGTGTCTCCCATCTTTTTTCGGTCTATGGATTTTTAAGATCATTCAGCACACGATTGTTTCTTCATCCCTTTACTTTGGATGATTTTGTTGGTTCTCTTAACTGTAAATTCTCTAACAATTTGTTTGATGCTATTCACATTTCTTTGATGCGGGTGTTGAGGCGTCATCTTGAAACCCTATCACCTGAGGGATCTGAGCTTGCATCGCAATGCCTGAGGTGCTACGATTGGAACTTGCTTGACACATTGACTTGGCCTGTTTTTGTGGTTCTTTATTTGTTGGTTAATGGGTTCACGAAAGGACCTGAATGGAAAGGATTTTACGATGAGGTTTTTAGTGGCGAGTATTATTTGTTGCCTGTAAGTAGGAAGTTAGTGATACTGCAAATTCTTTGTGACGATGTTTTGGAATCTGATGAGCTTAAAACTGAAATGAGCACGCGAAAGGAGTCAGAGGTTGGGATGGATTATGATGCAGAAGATACCATTCCTGCTGAAACAGGCCCCAGAAAGGTCCATCCAAGATATGCCAGGACCTCTTTTTGTGAGGATAAAGAAGCTATAAAATTGGTTTCAGCATCAATTGCTGTAAACCAACCTGGTTCATATTGCAGAGATACAGAAAACACTGGGGATGGGGATGCTGATAGAAATGGAGATGATTGTCGCCTCTGTGGTATGGACGGAACCCTTCTTTGCTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTAATGAAAATGTTTATACCAGAAGGACCATGGTATTGTCCAGAGTGCAAAATCAACATGGCTGGGCCCTCAATTGCAAAGGCAACCTCACTTAGAGGGGCTGAAATATTTGGAAGGGATTTGTATGGGCAGCTCTTCATGGGCACATGCGACCACTTACTCGTGCTTAACATTGACAACAATGAAGTTTGTCTTAGATATTACAATCAGAAAGACATCCCTAAAGTTGTCCAAGTGCTTTATGAATCCATGCCGCACAGGCCAATGTACTATGATATTTGCATGGCTGTGTTACAATATTGGAATGTTGCAGAAAAGTTCTTACCTCTTCCTGCTTCAACTGAAACAAATATAAAGGATGAGACACAATTTCCTGCTCCTTTACTTCCTCCTCCAAGCGAAGACAACAATAAGCCTGTTAGTTTGGTCCAGGGAGAGAACTCTCCAACCACTGCAAGTTTGATTCACAATCGTAATATGGTGTCTTCTCTTGATGCTTTAGAAGTTATCACTCAAAGTCCCGCTCTTGATAGTAGTGGCATTGCTAGAAGTGAAGAGGGCCTTACTATGAATAAGAACCTTGGTGAGGAAACTAGAATGGAGGCAATAATTTCAGCTGGTTCTGTTAGTCAGCAGTCCAACCTAAACATTCAGAATTCTGTCAATATGTCCACCGCTGTAGATGCCACTAAGCGCTCTTTGATAAACAGTCAATTAAGTAATTGTGTCCATGCAAATGATATGGGGTTGCCTTTGAATTTTTCTTCGCAAAACAAAGAAAGTGCACAATTAGGTTCTGGAAAGTGTGAATACAATGCAAATGATGATTTTAGTTACATGGGTTTCTTCTACAAACCCATGTCATACATAAATTACTATATGCATGGTGATTTTTCTGCATCAGCAGCTTCCAAGTTTGCCATCGTTTCTTCAGAGGAATCTAGGTCAGAGGGTCTTGCATCAGACAGCCAGAAGAAAACTGCAGCAGCATATACTTATATGCAAGCAAAAGCATTCTCACTAACAGCTTCACGTTTCTTTTGGCCTAGTTCTGAAAAGAAGCTCGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCATTTCCTGTAAAGCCCCTGTTGCTAGCAAGAGAGGATGCATGTTAAATCATGCTCTTATAAGTGCGACAAAAAGTGCTGTAAAAATTCTTGCTACCTTTTCTCCTATAAGGAGTGGAGAGGGAATTCTTCCTAGCACCATTGCGACCTACCTTCTATATATGGAGAATTGTTTACATGGTCTAGTTGTTGGCACCTTCACAAATGCAAGCTTTCGAAAGAACTGGCGTAAGCAAGTGGAACGTGCCACAACATTTAGTGCTATCAAGCCACTTCTACTCAAACTTGAGGAGAACATTCGAATCGTTGCTTTTTGTGGCGATTGGGTTAAGCTGATGGATGATTGGTCGGTCGAATTTCCAGTTATACAAAGTGCCACATCTACTCTTGGAACAACTCAGAAACGTGCACCAAGTGGGAAGCGTTATAAAAAGAAGTCATCTATTGATGAAGCTACAGTTGATGTTTCTAAGGAAGGTATATGGTGGCGTGGTGGGAAAGTTACCAAGTATATTTTTCAGAGTGCAGCTTTGCCGAAATCCATGGTCAGAAAAGCAGCCCGCCAAGGTGGTTCTAGGAAAATTTCTGGTATTGTATATGCCGATGGCTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGCCGCAGTTCAAATGAGTAGGAATGCCTCACAGCTGGCACTCCAGGTCAGATGTCTAGATTCTTATCTTAGATGGAGTGATCTGATTCGTCCAGAGCAGAACATACAGGAAGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCCGAAATGCAAATATTTGTGACAAAAAACTTGTAGAGGGAAAAGTTTGTTATGGAGTAGCTTTTGGGAGCCAAAAGCATCTTCCTAATCGGGTGATGAAAAGCGTTGTTGAAAAAGAGCAATGTCCATTGGGAAAAGAAAAGTATTGGTTTTCTGAAACTCGCATTCCTTTATATTTGGTAAAGGAGTATGAAGAAGGTAATGAAAAGGTTCCATGTGAAGAGCAGTATAGTGGCCCATCTCAGTTGCACAAAAGGCGGTTGAAAGGTACCTGCAAAGGCTGTAATGACATCTTCTTTTACCTCGTTTGCAAGAGAGACAACTTGGCATTCTTGTGCTCTTCATGTCGGATGGGCATTTCAATTCGGAATGCTCACAAGTGTAATGCATGTCAAGGTTATTGTCACGAGGACTGTTCCGTAAGCTCAGTCTTGAGACTCTCTACAAATGGGAGAGTTGAGTGCTTGACCACATGCAAACAATGTCACCATGCCAAGTTACTTGCTCCAAATGTAACTAGCAATGAATCTCCAACCAGTCCCTTAATCTTACAGAGACTGGAAACCAGCACTGGGACTGGGATCATTTTTAAGGGACCAAGGCCAAAGGCCGGTTATTCTGATGTGAAACAAGTCAATTCCATGTCAGGTTTGAAAGGATCTAAGCGCAAATCTCAAGATCAAACTTCGACTTCTACGAAGAAAAAGAATAATCATCCTGACACAAAACAAGCCGCGGCTGATTCTACTTTGGCATCAAGCAACCGTCGCAACAATAATTGTTCTTGGGGTATAATATGGAAAAGGAGAAGTAATGAAGATACAAACATTGATTTTAGGATTAAAAACATATTATTAAAGGGAGGATCAGACATACCTGATTTGTCTCCTGTTTGTCACTTATGCAAAAACGACTATAGGTCAGATCTAATGTATATTTGCTGCGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTTGGATGTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTCTGTCCTTACGATGCAAAACCAAAGTCAGAAGTTAAGAAATCACGCAGAAAGTCTTCAAAGAAACAGCATTCTGGACCTGATTCTGATTCTGGAGCATTTAATGATATGAGAGAGTCTGAGCCTGCTACTCCTGTGTTTCCTGTAGAGAATGATCCTTTACTTTTCTCTCTTGCAAAAGTTGAGCTGATTACAGAACCTAATCAATTAGAATCGGATGTTGAGTGGAACACTCTCTCTATGCCAGGGCCTCAGAAATTACCCGTGAGAAGGCATGTTAAGCAAGAGGGGGGTGGTGATGGTTCTGTTTCAGGAATACCTTTTCATGATGAATTTTCAACATACAGTGAAGCAGGTAATCTGTCCAATCCCGCAAATTCGAAATTACCTGTGAGAAGGCATGTTAAGAATGAGGGGGGTGGTGATGGTTCTGTTTCAGGAATACCTTTTCATGATGAATTTTCAACATACAGTGAAGCAGTTAATCTGTCCAATCCCGCAGATTCGATATTACCTTTAGAATACGACTCTGCTGTTTTTGACAGCGATCTGCTGAGCAACTCTGAATTTGTAAATAATGATGACAACATGTTTAATGATAATACCATCTTCGATGTAAATGACCTGCTGCGCTCAGACGACAGCCAGATTGGTGAAGGTGATGTGACAGGGGAATTATTGGGATACAACATGGACCAGAATGATGAAGGTGATATGCCTGGGGAATTATTGGGATACAACATTGAGAATTCTGGTACCCCTCTTCCTGAAGAATTTGGAGATGGCAATTTTTTCTGTGCTGAATGTTTACAAACTGAACCCGGCCCTGAGTTTTTTTGTGGGACTTGTGGGGTTTTGTATCATAGCCATTGTTTGCCTTGGCCTGAATCAGCTTCCGATCCTTTACATTGGACGTGCCAGACTTGCAGGGATTGGCAATAA 5211 0.422 MEQPVPRSRGRPRKRRKEDEKDGKSVPDAKRQAVERKPIALVGRYVRKKFPRNGVFLGKVVYYESGLYRVIYEDGDFEDLESGEIRPILVSDAVDFDVGMSKRKTKLEKLVLQNRAKAADVADTGSPKSVKEESAVDVTGPSEMDGGLSVENDKDVEEDDGADDDLSSVSVSDAEMVPLPPPLLLPHSSGTIGVPELSVSHLFSVYGFLRSFSTRLFLHPFTLDDFVGSLNCKFSNNLFDAIHISLMRVLRRHLETLSPEGSELASQCLRCYDWNLLDTLTWPVFVVLYLLVNGFTKGPEWKGFYDEVFSGEYYLLPVSRKLVILQILCDDVLESDELKTEMSTRKESEVGMDYDAEDTIPAETGPRKVHPRYARTSFCEDKEAIKLVSASIAVNQPGSYCRDTENTGDGDADRNGDDCRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMAGPSIAKATSLRGAEIFGRDLYGQLFMGTCDHLLVLNIDNNEVCLRYYNQKDIPKVVQVLYESMPHRPMYYDICMAVLQYWNVAEKFLPLPASTETNIKDETQFPAPLLPPPSEDNNKPVSLVQGENSPTTASLIHNRNMVSSLDALEVITQSPALDSSGIARSEEGLTMNKNLGEETRMEAIISAGSVSQQSNLNIQNSVNMSTAVDATKRSLINSQLSNCVHANDMGLPLNFSSQNKESAQLGSGKCEYNANDDFSYMGFFYKPMSYINYYMHGDFSASAASKFAIVSSEESRSEGLASDSQKKTAAAYTYMQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCISCKAPVASKRGCMLNHALISATKSAVKILATFSPIRSGEGILPSTIATYLLYMENCLHGLVVGTFTNASFRKNWRKQVERATTFSAIKPLLLKLEENIRIVAFCGDWVKLMDDWSVEFPVIQSATSTLGTTQKRAPSGKRYKKKSSIDEATVDVSKEGIWWRGGKVTKYIFQSAALPKSMVRKAARQGGSRKISGIVYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRCLDSYLRWSDLIRPEQNIQEGKGQETEASAFRNANICDKKLVEGKVCYGVAFGSQKHLPNRVMKSVVEKEQCPLGKEKYWFSETRIPLYLVKEYEEGNEKVPCEEQYSGPSQLHKRRLKGTCKGCNDIFFYLVCKRDNLAFLCSSCRMGISIRNAHKCNACQGYCHEDCSVSSVLRLSTNGRVECLTTCKQCHHAKLLAPNVTSNESPTSPLILQRLETSTGTGIIFKGPRPKAGYSDVKQVNSMSGLKGSKRKSQDQTSTSTKKKNNHPDTKQAAADSTLASSNRRNNNCSWGIIWKRRSNEDTNIDFRIKNILLKGGSDIPDLSPVCHLCKNDYRSDLMYICCETCQNWYHAEAVELEESKILDVLGFKCCKCRRIKSPVCPYDAKPKSEVKKSRRKSSKKQHSGPDSDSGAFNDMRESEPATPVFPVENDPLLFSLAKVELITEPNQLESDVEWNTLSMPGPQKLPVRRHVKQEGGGDGSVSGIPFHDEFSTYSEAGNLSNPANSKLPVRRHVKNEGGGDGSVSGIPFHDEFSTYSEAVNLSNPADSILPLEYDSAVFDSDLLSNSEFVNNDDNMFNDNTIFDVNDLLRSDDSQIGEGDVTGELLGYNMDQNDEGDMPGELLGYNIENSGTPLPEEFGDGNFFCAECLQTEPGPEFFCGTCGVLYHSHCLPWPESASDPLHWTCQTCRDWQ 1736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 1300 1314 - -
Vivi517g00010 1736 CDD PHD2_CHD_II 419 460 - -
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 1285 1327 - -
Vivi517g00010 1736 PANTHER PHD FINGER FAMILY PROTEIN 35 1468 - -
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 152 166 - -
Vivi517g00010 1736 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 301 342 IPR028942 -
Vivi517g00010 1736 SUPERFAMILY FYVE/PHD zinc finger 1363 1424 IPR011011 -
Vivi517g00010 1736 SMART PHD_3 1688 1733 IPR001965 -
Vivi517g00010 1736 SMART PHD_3 418 461 IPR001965 -
Vivi517g00010 1736 SMART PHD_3 1370 1418 IPR001965 -
Vivi517g00010 1736 Gene3D Cupin 1367 1500 - -
Vivi517g00010 1736 ProSiteProfiles Zinc finger PHD-type profile. 416 463 IPR019787 -
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 1285 1299 - -
Vivi517g00010 1736 SUPERFAMILY FYVE/PHD zinc finger 406 465 IPR011011 -
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 1428 1469 - -
Vivi517g00010 1736 ProSitePatterns Zinc finger PHD-type signature. 419 460 IPR019786 -
Vivi517g00010 1736 CDD PHD_SF 1688 1732 - -
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 13 32 - -
Vivi517g00010 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 465 IPR013083 -
Vivi517g00010 1736 SUPERFAMILY FYVE/PHD zinc finger 1679 1733 IPR011011 -
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 1 32 - -
Vivi517g00010 1736 ProSiteProfiles DDT domain profile. 196 256 IPR018501 -
Vivi517g00010 1736 CDD Tudor_AtPTM-like 42 89 IPR047365 -
Vivi517g00010 1736 MobiDBLite consensus disorder prediction 121 167 - -
Vivi517g00010 1736 Pfam PHD-finger 419 461 IPR019787 -
Vivi517g00010 1736 Pfam DDT domain 198 253 IPR018501 -
Vivi517g00010 1736 SMART testlast3 196 256 IPR018501 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi517g00010 289 562 EF-hand Containing Proteins AT5G22760 49.301 1.73e-75 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vivi517g00010 DDT 2.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi517g00010 - - tpra:123920021 2495.31