Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi512g00014 ATGGATAGTCCTCATTCTTCTTCTTGCATCATTGTTGCTTGTGATGCCACAAGGGACCGCAATGAGCACGAGATCAAGATCGTTATTGATCATGTTCGAGCCAGGGATATCATGCTCGCTTCTGGTGACAGGTTGCTTGTGCTATGCATCTTGCATAAGGTGTCTCATCCCATGGGGTACCAGACATTAGCATCTCCTGAGGCTTTTGCCGGCACCAACTTTCGAGCAATGGAAGAAGAAGTCAGAAAAAAAGTGCATGGTTATGCAAATGTGCTTTTATCTACTCTTGAAGATTTTGATATCCAAGGGGTTACCGTCGACATTCAAGTCACCGCAGGTTTTCCAATCAGACAGGTTATTTTACAAGAGATTAAGAACTACAATGGATCTTGGATTGTACTAGATAGACACCTTCGGCGCGACATGAGATACCATCTTAACAAGATACCATGTAAGGTAGCATTGGTTAAAGATGATTTGTCCGTGGATATATGGAGATCTCACAACGCACATGACACAAATGTCACAGCAACCAAGCCGGTCTTTTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGAGAATATAGACATCTCATTACATCTCAGATTGGTCAAAAGCAAAACCAAAGTGGCTTTCTACCAAAATCTTCAGATGCACCAATTCTATGTGTAGGCTGTGGAATAAGGACAGAGTTATCTATCAAAGAGTCCAACAGGTTCAGCTACTCTGAAATACAGGTTGCAACAAATGACTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGCCATGTATATAAGGGTGTGCTTAAAGACGGACAGCAAATTGCTGCAAAAGTAAGGAAAGAAGAAAGTGCACAAGGATTTTCTGAATTTCATTCAGAGGTTTATATCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGCTGGGTTACTGTTGCAAAGAAAATAAAAATATTCTTATATATGAATATATTTGTAATAAGTCTCTTCATTGGCATTTATTTGAAAACAATGACGCGGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGACTGCAAAGGGATTGCGTTTTCTGCATGAAGAATGCAGAGGTGGTCCTATTATTCATAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCTATGCTAGGTGATTTTGGCCTTGCCAAATGGATTACAGGCGGTGATCCTCTTGAAACAAGGATAATGGGCACATTAGGATACCTTGCTCCTGAGTATGCTGAAGATGGTATAGTTTCGGAAGGGACAGATGTGTATTCTTATGGCGTTACTTTGTTACAATTGATATCAGGACGTCAAGTGGGTAATCCAGATCAGCAACAACAATCTCTTCGACAATGGGCTGAACCAATGATTGAGAAATTGGCTTTACAAGAACTGATTGATCCTCGTTTGGGAGAATCATATGACACATATGAACTATACCTTATGGCTAAAGCAGCAAATTTCTGCATGCAAAGAAAGCCCGAGATGCGTCCATCAATGAGAGAGGTTGTGCGGTTTCTTGAGGGAGAAAGTTACCATTTCAATACCTAG 1593 0.4036 MDSPHSSSCIIVACDATRDRNEHEIKIVIDHVRARDIMLASGDRLLVLCILHKVSHPMGYQTLASPEAFAGTNFRAMEEEVRKKVHGYANVLLSTLEDFDIQGVTVDIQVTAGFPIRQVILQEIKNYNGSWIVLDRHLRRDMRYHLNKIPCKVALVKDDLSVDIWRSHNAHDTNVTATKPVFSLSKFVSLSDCHREYRHLITSQIGQKQNQSGFLPKSSDAPILCVGCGIRTELSIKESNRFSYSEIQVATNDFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKEESAQGFSEFHSEVYILSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENNDAVLDWPQRYGIALGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWITGGDPLETRIMGTLGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVGNPDQQQQSLRQWAEPMIEKLALQELIDPRLGESYDTYELYLMAKAANFCMQRKPEMRPSMREVVRFLEGESYHFNT 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi512g00014 530 Gene3D HUPs 3 157 IPR014729 -
Vivi512g00014 530 SUPERFAMILY Protein kinase-like (PK-like) 238 523 IPR011009 -
Vivi512g00014 530 Gene3D Phosphorylase Kinase; domain 1 228 329 - -
Vivi512g00014 530 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 199 525 - -
Vivi512g00014 530 ProSitePatterns Tyrosine protein kinases specific active-site signature. 375 387 IPR008266 GO:0004672|GO:0006468
Vivi512g00014 530 Gene3D Transferase(Phosphotransferase) domain 1 331 528 - -
Vivi512g00014 530 Pfam Protein kinase domain 255 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi512g00014 530 FunFam Lectin-domain containing receptor kinase A4.3 330 529 - -
Vivi512g00014 530 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 227 329 - -
Vivi512g00014 530 CDD STKc_IRAK 260 523 - -
Vivi512g00014 530 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Vivi512g00014 530 ProSiteProfiles Protein kinase domain profile. 254 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi512g00014 242 522 Trihelix Transcription Factor Family AT5G38560 45.517 1.38e-77 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vivi512g00014 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi512g00014 - - var:108330428 841.647