Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi508g00005 ATGGAGAATATTCACGTTCATAATAGTAATAATAATCATCATCATCATGCAAGTGCTGAAGAGACTATTCTTGAGAATGTTTGGGCTAAGATTACAAGCAATGATGATGGAAGAACAAAAGGAAATGAAGGTGAATGTTCTAACACATGGGAAGATTTGCCTAATCTTGGTGAAAGAGATAATGGATCCGTTGAAATTCTTCAAAGACTACCGAGTTTAGGAAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAGGTGTTAAGCAATGGAGAAGATTTTTCTAGCAACAAAAGCACGGAAAAAAGTGAAAGTGCTAATAAATCAAAGAAAAAAGTAGAAGATGTTGTGGTGAGAAAAGAGAGAAAAAGAGATGAAAAACATTATAGAGGAGTGAGGAGAAGGCCATGGGGTAAATATGCAGCTGAGATAAGGGATTCTTCGAAGAAAGGTGCGAGAGTTTGGCTTGGTACATTTGATAAAGCTGAGGAAGCTGCTTTAGCTTATGATAAAGCAGCTTTGAGAATTAGAGGGTCAAAAGCATGTCTTAACTTCCCAGTAGAGAGAGTTACTAATATGAATACAAATGCTTTAGGGTGTGGTGTGAAAGGAATTGATGGTGTTGCAAACAGTGAAAGGTTATTGGATTCTAGGAAGAGAGGATTTGTTGATGTGATGAATATTGAAGAACCTGCAAGAAAAAAGATGGTAGAGTTGGAAGAAATGTTGGAGAATGATGTTTTTGTGTTTCAGGACTTGGGAGTTGATTACTTGGACAGTTTGTTGTCTTCATTTTGA 798 0.3697 MENIHVHNSNNNHHHHASAEETILENVWAKITSNDDGRTKGNEGECSNTWEDLPNLGERDNGSVEILQRLPSLGRWISMGADFWEEVLSNGEDFSSNKSTEKSESANKSKKKVEDVVVRKERKRDEKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDKAEEAALAYDKAALRIRGSKACLNFPVERVTNMNTNALGCGVKGIDGVANSERLLDSRKRGFVDVMNIEEPARKKMVELEEMLENDVFVFQDLGVDYLDSLLSSF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi508g00005 265 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Vivi508g00005 265 CDD AP2 127 187 IPR001471 GO:0003700|GO:0006355
Vivi508g00005 265 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
Vivi508g00005 265 MobiDBLite consensus disorder prediction 97 116 - -
Vivi508g00005 265 FunFam Ethylene-responsive transcription factor 2 127 188 - -
Vivi508g00005 265 PANTHER DNA-BINDING DOMAIN 96 217 IPR044808 GO:0003700|GO:0009873
Vivi508g00005 265 MobiDBLite consensus disorder prediction 93 116 - -
Vivi508g00005 265 Gene3D AP2/ERF domain 127 188 IPR036955 GO:0003700|GO:0006355
Vivi508g00005 265 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Vivi508g00005 265 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Vivi508g00005 265 PRINTS Ethylene responsive element binding protein signature 168 188 IPR001471 GO:0003700|GO:0006355
Vivi508g00005 265 MobiDBLite consensus disorder prediction 34 54 - -
Vivi508g00005 265 SUPERFAMILY DNA-binding domain 128 188 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi508g00005 23 265 AP2-EREBP Transcription Factor Family AT4G18450 35.762 6.04e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi508g00005 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi508g00005 - - mtr:11443318 344.354