LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi508g00004	ATGGTTCTATCATCACAATCCCAAACAGAACTCCCCTTAAACGAAAACGATTCACAAGACATGGTAATATACCAAGTCCTAACCGAGGCCAACACTCTAACCAACACATTTCTCCCACAAAGAAACCACCACAATCATCAACCTCTTACTGCCTTAGAGCCCACGAAAGCTATCACCAAGAAGCACTACAGAGGCGTCCGGCGTCGGCCGTGGGGGAAATACGCGGCCGAGATTCGCGACTCGGCTCGTCATGGAACCAGAGTCTGGCTTGGAACTTTTCAAACGGCTGAAGAAGCTGCTATGGCTTATGATAGAGCAGCTTTCGAAATGAGAGGTTCGAAGGCCTTGCTTAATTTTCCAGCTGAAACTGTTGCTGCAGCTTCCATGAAAATGGAGTTTCCTAGTTCTAAACTCAACTTGAATAATCATAATCATAATGATCATTCATCACAAAGTTGA	459	0.4532	MVLSSQSQTELPLNENDSQDMVIYQVLTEANTLTNTFLPQRNHHNHQPLTALEPTKAITKKHYRGVRRRPWGKYAAEIRDSARHGTRVWLGTFQTAEEAAMAYDRAAFEMRGSKALLNFPAETVAAASMKMEFPSSKLNLNNHNHNDHSSQS	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi508g00004	152	PRINTS	Ethylene responsive element binding protein signature	86	102	IPR001471	GO:0003700\|GO:0006355
	Vivi508g00004	152	PRINTS	Ethylene responsive element binding protein signature	63	74	IPR001471	GO:0003700\|GO:0006355
	Vivi508g00004	152	PANTHER	DNA-BINDING DOMAIN	43	132	IPR044808	GO:0003700\|GO:0009873
	Vivi508g00004	152	Gene3D	AP2/ERF domain	61	123	IPR036955	GO:0003700\|GO:0006355
	Vivi508g00004	152	ProSiteProfiles	AP2/ERF domain profile.	62	120	IPR001471	GO:0003700\|GO:0006355
	Vivi508g00004	152	CDD	AP2	61	121	IPR001471	GO:0003700\|GO:0006355
	Vivi508g00004	152	Pfam	AP2 domain	62	112	IPR001471	GO:0003700\|GO:0006355
	Vivi508g00004	152	SUPERFAMILY	DNA-binding domain	62	121	IPR016177	GO:0003677
	Vivi508g00004	152	SMART	rav1_2	62	126	IPR001471	GO:0003700\|GO:0006355
	Vivi508g00004	152	FunFam	Ethylene-responsive transcription factor 2	61	122	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi508g00004	5	120	AP2-EREBP Transcription Factor Family	AT5G47220	53.383	7.01e-41	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi508g00004		AP2	1.3e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi508g00004	K13433		-	gmx:100811533	197.208