Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi500g00041 ATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGTCATAACTCACGGACATGTCCGTCGAGAGGCAGTGGCGGCAGCGGCGGCGGTGGGGTTAGGCTTTTTGGTGTTAGATTGACGGATGGATCGATTATTAAAAAGAGTGCGAGTATGGGGAATTTAACGCTTGCGAATCATCATCATTGTTCTTCTCCTTCGTCGGTTAATCCCGGTTCGATTGTTAACCCCGGTTCACCGTGTTCTGACCCGCCCAATGAACCGGAAGGTTATTTGTCTGATGATCCTGCAAATGTTTCCAGCTTCGCTATCCGCCGCAGCGACAGAAAGAAAGGTGTTCCATGGACTGAAGAAGAACACCGGATGTTCTTGGTTGGACTCCATAAACTAGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTATGTTGTGTCAAGGACCCCTACTCAAGTTGCAAGTCATGCACAGAAGTACTTCATCCGTCAGAGTAATGCTACCAGGAGAAAGAGACGTACGAGTCTTTTCGACATGACTCCTGATATGTATCCAGATTCAACTTCAATGCCAGAAGAACAAGTACTACTTCCACCTTCTGAGAACTCACAACCTTGCAATGGAAAATCACATCCGTCACTAAATCTCTCTCTCAAGTCAGAATATGAACCAATGGAAACTACATCCGAAGAAAACGTAGAAGAGGGCAATGAAAATCCTATGGGATCGAATAGATTGACACCAATGACTCACGGATTCTTTCCATCTTATTTACCTGTCTCATTTTCCATGTGGCCGACAATTGGAGCTCCCTTTGAAGTATCCAACGGTGGAGAGACATCTCATCATAGTCATCATCAGGTTCTCAAGCCGATACCGGTCATTCCTAAGGAACCCGTCAACGTTGATGAACTCGTGGGGATGTCTCATTTGAGCATCGGGGAAACACAGGTGTGTGATAGAGAGCCTCCCCCTCTTTCCTTGAATTTGTTAGGAGAGCCCTCAAGACAATCAGCATTCCACGCAAATACTCCGGTTGGTGGCTCTGATCTAAACAGTGGCAAAAACAACGCCATTCAAGCGGTTTGA 1077 0.4698 MTRRCSHCSNNGHNSRTCPSRGSGGSGGGGVRLFGVRLTDGSIIKKSASMGNLTLANHHHCSSPSSVNPGSIVNPGSPCSDPPNEPEGYLSDDPANVSSFAIRRSDRKKGVPWTEEEHRMFLVGLHKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNATRRKRRTSLFDMTPDMYPDSTSMPEEQVLLPPSENSQPCNGKSHPSLNLSLKSEYEPMETTSEENVEEGNENPMGSNRLTPMTHGFFPSYLPVSFSMWPTIGAPFEVSNGGETSHHSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQVCDREPPPLSLNLLGEPSRQSAFHANTPVGGSDLNSGKNNAIQAV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi500g00041 358 FunFam transcription factor MYB1R1 111 162 - -
Vivi500g00041 358 MobiDBLite consensus disorder prediction 59 96 - -
Vivi500g00041 358 PANTHER TRANSCRIPTION FACTOR KUA1 3 290 - -
Vivi500g00041 358 MobiDBLite consensus disorder prediction 1 22 - -
Vivi500g00041 358 ProSiteProfiles SANT domain profile. 113 161 IPR017884 -
Vivi500g00041 358 Gene3D - 111 162 - -
Vivi500g00041 358 ProSiteProfiles Myb-like domain profile. 105 157 IPR001005 -
Vivi500g00041 358 SMART sant 109 159 IPR001005 -
Vivi500g00041 358 SUPERFAMILY Homeodomain-like 107 162 IPR009057 -
Vivi500g00041 358 MobiDBLite consensus disorder prediction 1 26 - -
Vivi500g00041 358 MobiDBLite consensus disorder prediction 174 241 - -
Vivi500g00041 358 Pfam Myb-like DNA-binding domain 112 157 IPR001005 -
Vivi500g00041 358 MobiDBLite consensus disorder prediction 59 78 - -
Vivi500g00041 358 MobiDBLite consensus disorder prediction 334 358 - -
Vivi500g00041 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 160 IPR006447 GO:0003677
Vivi500g00041 358 CDD SANT 112 157 IPR001005 -
Vivi500g00041 358 MobiDBLite consensus disorder prediction 189 219 - -
Vivi500g00041 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 161 IPR017930 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi500g00041 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi500g00041 - - gmx:778036 546.584