Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi500g00030 ATGAATGAAATGTCAAGAAACGAGAGAGAATCTTCAGAGGAAAGAAAGCTTGAACTAAGGCTTGCTCCACCTGGTGTTGAAAACTGGTTTCACACCACCAACAACAACAAACAAAGAGATCTTGATTTTGATACAAACCATAAACTCTCTCTTGGTAGTAGTAACTACTTTTCAACAAACAATACATCATCATTTCTTCACTTTCCATCAACCCAACAACATGTGAGAGGCAAAGAATCTTCATCATCACTAGCCTGTTGTCCTAAGCTTGTAGACTTACAGAATGGTGATAATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTAGGTTGGCCACCTATAAGGTCATTCAGGAAGAATCTTGCAACAAGCAGCAATTCTAAACCAACATCACAAACTGATTCTCAGACTCAACATCTTCAAAACAAGGTTGTTGCTGGTAAAAAACCTGTTGATAACAACTATGGTAGTAAAGGTTTGTTTGTTAAAATCAACATGGATGGTGTTCCTATTGGTAGAAAAGTTGATCTCAAAGCTTATCATAGCTATGAAAATCTCTCCATAGCTGTTGATGAACTCTTTAGAGGACTCCTTAAAGCTCAAGGAGATTCTTCTGGTTGTGGTGGAAGCAAGAAAAATGAAGATGAAGAAAAAGTGATTAGTGGAATATTGGATGGAAGTGGAGAATATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGTGTGTTGAAGAGTACAGAGCTTTCTGCATTTACACTTGGGACTACTAAGCAAGAGAAGATATGTACTTGA 876 0.3813 MNEMSRNERESSEERKLELRLAPPGVENWFHTTNNNKQRDLDFDTNHKLSLGSSNYFSTNNTSSFLHFPSTQQHVRGKESSSSLACCPKLVDLQNGDNNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSNSKPTSQTDSQTQHLQNKVVAGKKPVDNNYGSKGLFVKINMDGVPIGRKVDLKAYHSYENLSIAVDELFRGLLKAQGDSSGCGGSKKNEDEEKVISGILDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTTKQEKICT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi500g00030 291 FunFam Auxin-responsive protein 163 285 - -
Vivi500g00030 291 MobiDBLite consensus disorder prediction 130 150 - -
Vivi500g00030 291 SUPERFAMILY CAD & PB1 domains 163 270 - -
Vivi500g00030 291 Gene3D - 163 285 - -
Vivi500g00030 291 ProSiteProfiles PB1 domain profile. 168 273 IPR000270 GO:0005515
Vivi500g00030 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 276 IPR003311 GO:0005634|GO:0006355
Vivi500g00030 291 Pfam AUX/IAA family 17 277 IPR033389 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi500g00030 172 282 B3 DNA Binding Superfamily AT4G23980 33.333 6.99e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi500g00030 AUX_IAA 2.4e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi500g00030 K14484 - gmx:100804593 311.997