Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi500g00026 ATGGAGAATTGTGATACTAAGGTTGTTATCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATCGGCATTGCTCTTTGTTGTTGTCTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAAGAAGGTGCATCAGAAGCAGACCTTAGTATACTTCCAAAATACAGATTTCGATTATTAAACAATGAGGAGAAGGATAGCGGTGGAGCTGGATCGATGGTTCCCACAGAAACCTCCAGTGGATACTTGGATAATGAACGGATACTTATACCTGGGGATGCGGAATGCTGTATATGCCTCTGTCCATACGAGGATGGAGTGGAGCTTCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGTAAGTACAATATCCTCAAGGGAAACGAACAAGTATAA 471 0.4183 MENCDTKVVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLLNNEEKDSGGAGSMVPTETSSGYLDNERILIPGDAECCICLCPYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi500g00026 156 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vivi500g00026 156 CDD RING-H2_PA-TM-RING 104 146 - -
Vivi500g00026 156 SMART ring_2 105 145 IPR001841 -
Vivi500g00026 156 SUPERFAMILY RING/U-box 95 150 - -
Vivi500g00026 156 FunFam E3 ubiquitin protein ligase RIE1 85 153 - -
Vivi500g00026 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 154 IPR013083 -
Vivi500g00026 156 PANTHER TARGET OF ERK KINASE MPK-1 9 154 - -
Vivi500g00026 156 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Vivi500g00026 156 Pfam Ring finger domain 104 146 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi500g00026 10 155 C3H Transcription Factor Family AT1G68070 80.137 2.86e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi500g00026 - K13148 vvo:131632452 305.064