Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi500g00005 ATGGAGAATCTTAGTTGGGATGATGACTCACAATTTGTTGCCAACATACCAATCTTGTGGAACACTCAACCTCAAGATCTTGAAAGAGAGTACTCAATATCAAATCCAAGTTCAAATTTTCTTAGTTATCAAATGCAAGAGATGCAGAAGGTTCAATCAGGAGCTGGAATCAGTTGGGAAGAAAGTTTAATATTTCAATCATACCCTTCTTCACTTTCAGTCAATGTCAACACACCTAACAATTATGTGCCAGATTGCAACATGGTCCACCAACAAATCAGCAAGAGTACTACTACCAGCTCTCTTGAATCATCACTTGAATGTTTGCTTTCAGCCACTACTAATAGTAACACCGAGACGAATTCTATTCAAGATGATGGAATTTCCATGATTTTTTCTGATTGCAAAAACCGAAACTTATGGAACTTTAGTGCAGTTTCATCTGGTGAATCTGAGAGTACTAATGCATCCATTATTAGTGCTAGAAACAAAGACATGAAGTATCCATTCAAGGAACTAGATCATGAAATAGTGTCTCAAACTTCCTCAGATCAAGGTAAAATCGCTGATAATTCCAAGGTTTATTCGACAAAAAGGACTAATATTGATCATTATGATCCTTACTTCAGTATTACTACTACTACTCAGAATTCTTCTTCTGCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCGAAATCGAAGAAGCCAAGATGGGACGATGATAATAAGAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCGAATTCATCGCTTTCATTGTCAAATTCATCGATTCACGAAGAGCCTGATCCAGAAGCTATAGCACAAATGAAGGAAATGATATACAGAGCTGCAGCATTTAGGCCAGTGATGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAGAGAAAGAATGTTAAGATATCAAAAGATCCACAAACTGTGGCTGCTAGACAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTTAGGTCACAAGTCAAAGCTTTAGAGAATCTAGGAAACAAGATTGATACTATGAATAATTGTCCTTCTTCAAGCATAGCCTTCTCCTTCAACCCTTCAATTCCCATGCAAAACCCTAATGACCATATCCAATATTCCTAA 1227 0.3757 MENLSWDDDSQFVANIPILWNTQPQDLEREYSISNPSSNFLSYQMQEMQKVQSGAGISWEESLIFQSYPSSLSVNVNTPNNYVPDCNMVHQQISKSTTTSSLESSLECLLSATTNSNTETNSIQDDGISMIFSDCKNRNLWNFSAVSSGESESTNASIISARNKDMKYPFKELDHEIVSQTSSDQGKIADNSKVYSTKRTNIDHYDPYFSITTTTQNSSSASTEFGFKLISEKPPKSKKPRWDDDNKKCPGSSNINFQQPNSSLSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVMEKPKRKNVKISKDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMNNCPSSSIAFSFNPSIPMQNPNDHIQYS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi500g00005 408 SMART finulus 320 369 IPR011598 GO:0046983
Vivi500g00005 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 374 IPR036638 GO:0046983
Vivi500g00005 408 MobiDBLite consensus disorder prediction 249 272 - -
Vivi500g00005 408 Pfam Helix-loop-helix DNA-binding domain 324 363 IPR011598 GO:0046983
Vivi500g00005 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Vivi500g00005 408 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 404 IPR045843 GO:0003700|GO:0006355
Vivi500g00005 408 Coils Coil 353 373 - -
Vivi500g00005 408 MobiDBLite consensus disorder prediction 231 248 - -
Vivi500g00005 408 Gene3D - 314 383 IPR036638 GO:0046983
Vivi500g00005 408 MobiDBLite consensus disorder prediction 230 274 - -
Vivi500g00005 408 FunFam BHLH transcription factor 317 381 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi500g00005 74 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.929 3.48e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi500g00005 HLH 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi500g00005 - - gmx:100778004 385.571