Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g06002 ATGCCTATGGTGTTGCTTCCTTCCTCTTGTTCCTGTTTCGTTAGCGGCTCTCATCACTTTTGTCGCTCCCTCTCCGTAAGCTTTGCCTCAAAGCCAATAAAACGTTCTCCTTTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCCATTCCTTTCACTGCCGTCAAAGCTATAGCTAATAGTCCCCTAGGGGAATCGCTTCAGAGAAAAATGGAAGACACAAAGAAATTCGCTCTTCAAAACTCCTCCAAATTTAAGGCTCAGGCTCAAAGAGCAAGAAAAATGAGCTTCTGGTACGGAGAAGGTCGGCCTCGTTGGCTTGGTCCTATTTCATATGGATACCCGTCACATCTTATTGGGGAACTTCCTGGGGATTATGGCTTTGACATTGCCGGCCTTGCCAAAGATCCAGTGGCGCTGCAGAAATATTTCAACTTTGAGTTATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTTTGATTCCTGAGTTATTACACCTGTTGGGAGCCTTTCACTTTGTAGAGCCTGTTTGGTGGCGCGTTGGTTATTCAAAGCTCCAGGTTGGACCAGAATACGCTAGATATTGTGGGATAGAGGCATTGGAGCCTCTAGGGATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAGTCTGTCCAAAGACCCTGAAGCTTTTGAAGATCTGAAGGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGCTTCTTCATGCAAGCGGCAGTGACGGGTAAAGGTCCTGTACAAAACATTATGGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGGTCACTCAATTCAATGAAATTACACTAG 897 0.4537 MPMVLLPSSCSCFVSGSHHFCRSLSVSFASKPIKRSPFICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEDTKKFALQNSSKFKAQAQRARKMSFWYGEGRPRWLGPISYGYPSHLIGELPGDYGFDIAGLAKDPVALQKYFNFELLHARWAMLASVGALIPELLHLLGAFHFVEPVWWRVGYSKLQVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLSLSKDPEAFEDLKVKEIKNGRLAMMAWLGFFMQAAVTGKGPVQNIMDHISDPFHNNLLGSLNSMKLH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g06002 298 Gene3D Chlorophyll a/b binding protein domain 111 291 - -
Vivi4g06002 298 Pfam Chlorophyll A-B binding protein 121 265 IPR022796 -
Vivi4g06002 298 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 81 289 IPR001344 GO:0009765|GO:0016020
Vivi4g06002 298 SUPERFAMILY Chlorophyll a-b binding protein 103 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g06002 Vivi-Chr4 197231806 197235450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g06002 33 294 Chloroplast and Mitochondria Gene Families AT1G76570 67.235 9.17e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g06002 K14172 - gmx:100786260 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g06002 4 197231806 197235450 Vivi4g06002 4 197231806 197235450 ECH