LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g06001	ATGCCTATGGTGTTGCTTCCTTCCTCTTGTTCCTGTTTCGTTAGCGGCTCTCATCACTTTTGTCGCTCCCTCTCCGTAAGCTTTGCCTCAAAGCCAATAAAACGTTCTCCTTTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCCATTCCTTTCACTGCCGTCAAAGCTATAGCTAATAGTCCCCTAGGGGAATCGCTTCAGAGAAAAATGGAAGACACAAAGAAATTCGCTCTTCAAAACTCCTCCAAATTTAAGGCTCAGGCTCAAAGAGCAAGAAAAATGAGCTTCTGGTACGGAGAAGGTCGGCCTCGTTGGCTTGGTCCTATTTCATATGGATACCCGTCACATCTTATTGGGGAACTTCCTGGGGATTATGGCTTTGACATTGCCGGCCTTGCCAAAGATCCAGTGGCGCTGCAGAAATATTTCAACTTTGAGTTATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTTTGATTCCTGAGTTATTACACCTGTTGGGAGCCTTTCACTTTGTAGAGCCTGTTTGGTGGCGCGTTGGTTATTCAAAGCTCCAGGGAGATACTCTAGATTACCTTGGCATCCCAGGTCTTCATTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATACGCTAGATATTGTGGGATAGAGGCATTGGAGCCTCTAGGGATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAGTCTGTCCAAAGACCCTGAAGCTTTTGAAGATCTGAAGGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGCTTCTTCATGCAAGCGGCAGTGACGGGTAAAGGTCCTGTACAAAACATTATGGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGGTCACTCAATTCAATGAAATTACACTAG	990	0.4545	MPMVLLPSSCSCFVSGSHHFCRSLSVSFASKPIKRSPFICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEDTKKFALQNSSKFKAQAQRARKMSFWYGEGRPRWLGPISYGYPSHLIGELPGDYGFDIAGLAKDPVALQKYFNFELLHARWAMLASVGALIPELLHLLGAFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLSLSKDPEAFEDLKVKEIKNGRLAMMAWLGFFMQAAVTGKGPVQNIMDHISDPFHNNLLGSLNSMKLH	329

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g06001	329	Gene3D	Chlorophyll a/b binding protein domain	111	322	-	-
	Vivi4g06001	329	Pfam	Chlorophyll A-B binding protein	121	296	IPR022796	-
	Vivi4g06001	329	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	81	320	IPR001344	GO:0009765\|GO:0016020
	Vivi4g06001	329	SUPERFAMILY	Chlorophyll a-b binding protein	103	324	-	-
	Vivi4g06001	329	FunFam	Chlorophyll a-b binding protein, chloroplastic	111	323	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g06001	Vivi-Chr4	197231806	197235450	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g06001	33	325	Chloroplast and Mitochondria Gene Families	AT1G76570	76.451	3.59e-173	481

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g06001	K14172		-	qsa:O6P43_026657	534.643