Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05991 ATGCATAAGCATGGACTCAGAGCAAGTCTTGCTCTGCGTTCAATTTCCACTTGTAAATCTAAGTGGCATCGTCACCAATATAAACCTCCAATCAAATTCTATTCATATCACACCACAACAACCACAGGTCCTGGGTTTATTGAACCTGCAGCAGGATCGTCTATGCAACTGCAAATTATCAAGGCACTCCGCTCCGGTGACAGAAAAAAGGCTTCCCACTTACTTCGGGATTTCGGTCGCAGAAGCCATTCATTATCTGTCAATGATTTTGTTGATATTTTTAAGTACTGTGCACGATCTCCTGATCCAATGTTTGTTATGGAGATCTGGAGATTAATGGAGTTAAAACACATTAACATTAATAACACATGTTCATCTCTTATGACGCGGGCCCTTTGTAAAGGGGCTTACATGGAAGAGGCCTTTAGTATCATTGATTTTCTTGGAGAAAATTGGCGTTTCTATCCAGGTCTCCCACTGTACAATAGTATTTTAAGCTCCTGCACAAAAATCCAGAATTTAATTCAAGCAAGAAGATGTTTGGACTTGATGGAAAAGCAATTGGTAGGAAAGAGTGAAGTTACATATACCGCACTTCTCAAGCTTGCAGTTTTGCAGAAAAACTTGCCTGCAGTCCATATAATTTGGCGGGAGTATAGTAAGCTTTATAGTATGAGTATCATTGCTCTGCGTAAATTCATTTGGTCATTTACAAGGTTGGGGGATCTAAAATCTGCGAATAGAACACTAGAACAGTTGGTGGCATTAGCCTCGAGGGGAAACATTTCTATTGCTAGAACAGTTTATGGGAAGTTGTATTCTACTAGATTGGACATCCCTGTTCCTGCAAATGACGGGCTAGGCTCAACCATATTGGACCTGAGGAAGAGCAAACAACATGACTCTTGTATACTCTCTCCTAGTTTGTATTTACCAGACACTATTTCTGCAAGTAAGGAGTTGAAATTTATTTGTATGGATGAGAAAAAAGCTAAGAATCCTGAAATAAATGGGCCGAATGGACGAAAGCACTCACTGCTTATGAAGGTTCTTAGGTGGTCTTTTAATGATATAATACATGGGTGTGCAAAAGAAAAAAACTATATACTTGCTTGGAAGCTTATATTACAGATGCAAAATCTTGGTTTGCAGCCATCCAGCCATACATATGACGGCATTATTAGAGCAGTTGTTTCTCAAAGAAGTTTTGGGGATGCCATGAGAATGTTAAAAAAAATGCAGCAGGAGAATATGAAGCTATACGATTCAACTCTAGCTACACTTTCAGTTTCTTTGAGCAGAGAACTACAGTTAGACTTGGCCGAATCTTTGCTGAATCAGATTTCTGATTGCTTGTATCCACATCCTTATAATGCTTTGCTGGCATCATGTGATGTACTGAATCAACCTGAGCGGGCTGTGCGAGTGTTTGCAAAGATGAGGAAAATAAAACTTTTACCTGATATGAGAACATATGAGCTTCTGTTTTCATTATTTGGTATTGTTAATGCCCCATACGAAGACAGTAATATGTTGTCACAAGTGGATGCTGCCAAAAGAATAAATGCTATAGAAAGGGATATGGCAAATAATGGCTTTCTGCATAGTCATCGTTCATTGAAAAATTTATTGAAATCCCTTGGAGAAGAGGGGATGATAAGAAAGCTGATCCAATATTTGCATGTGGCAGAAAATCTTTTCATATACAGTAATCCTTCATTGGGAACAGATATCTACAACATAGTGTTGCATTATCTTGTTGAAGCCCAAGAAAGCCACATGGCAATTCAAATTTTCAAGAAGATGAAGTTGTGTGGCTGCCACCCTGATTCCACTACATACAATATAATGGTCGACTGTTGTAGCGTCATAAGAAGTTATAGATCTGCTTCTTTGTTGATTTCAATGATGATACGGGAAGGGTTTTGTCCAGTGGCTTGTACATATACTGCTCTCATTAAGATTTTGTTGGAAGATGAGAATTTTAATGAAGCCCTGAATGTTCTGGAAAGAATCAAATTGGATGGCATTCAACTTGATGTACTGCTGTTTAACACATTTCTCCGTCAAGCATGTTACAAGGGAAGGATCGATGTAATTGAGTTTATTGTGGAGTTCATGCACCAAGAAAAAGTTCAGCCTGATCCAACAACATGTGAATATGTCTTCTCTGCATATGTAAACTCAAGTTTTCACAATACAGCAATAGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCTGAAGATGGCAACATACTCAAAGAGAGGAAAAATTTTGTGGATGAATTCATCCTTGATGAGGATTTGGCTTCTGAGTCACACATATTTAAATTATTTGAAGATTCAGAAGATGAAGTTGCAATAGGGTTGTTGAATTTAAGATGGTGTGCCATAGTTGGGTTTCCAATATGTGAGTCAGCTGACCAGAGTCTATGGGCTAAAAGACTTGAGTCACGATTCCTAAATAGGCTAGCGTCTGGTTCTAGAAGAGGAGAGCAATTGTGA 2508 0.3856 MHKHGLRASLALRSISTCKSKWHRHQYKPPIKFYSYHTTTTTGPGFIEPAAGSSMQLQIIKALRSGDRKKASHLLRDFGRRSHSLSVNDFVDIFKYCARSPDPMFVMEIWRLMELKHININNTCSSLMTRALCKGAYMEEAFSIIDFLGENWRFYPGLPLYNSILSSCTKIQNLIQARRCLDLMEKQLVGKSEVTYTALLKLAVLQKNLPAVHIIWREYSKLYSMSIIALRKFIWSFTRLGDLKSANRTLEQLVALASRGNISIARTVYGKLYSTRLDIPVPANDGLGSTILDLRKSKQHDSCILSPSLYLPDTISASKELKFICMDEKKAKNPEINGPNGRKHSLLMKVLRWSFNDIIHGCAKEKNYILAWKLILQMQNLGLQPSSHTYDGIIRAVVSQRSFGDAMRMLKKMQQENMKLYDSTLATLSVSLSRELQLDLAESLLNQISDCLYPHPYNALLASCDVLNQPERAVRVFAKMRKIKLLPDMRTYELLFSLFGIVNAPYEDSNMLSQVDAAKRINAIERDMANNGFLHSHRSLKNLLKSLGEEGMIRKLIQYLHVAENLFIYSNPSLGTDIYNIVLHYLVEAQESHMAIQIFKKMKLCGCHPDSTTYNIMVDCCSVIRSYRSASLLISMMIREGFCPVACTYTALIKILLEDENFNEALNVLERIKLDGIQLDVLLFNTFLRQACYKGRIDVIEFIVEFMHQEKVQPDPTTCEYVFSAYVNSSFHNTAIEALQVLSLRMMSEDGNILKERKNFVDEFILDEDLASESHIFKLFEDSEDEVAIGLLNLRWCAIVGFPICESADQSLWAKRLESRFLNRLASGSRRGEQL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05991 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Vivi4g05991 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Vivi4g05991 835 Pfam PPR repeat family 354 397 IPR002885 -
Vivi4g05991 835 Pfam PPR repeat family 578 621 IPR002885 -
Vivi4g05991 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Vivi4g05991 835 Gene3D Tetratricopeptide repeat domain 53 279 IPR011990 GO:0005515
Vivi4g05991 835 Gene3D Tetratricopeptide repeat domain 455 572 IPR011990 GO:0005515
Vivi4g05991 835 Gene3D Tetratricopeptide repeat domain 573 767 IPR011990 GO:0005515
Vivi4g05991 835 Gene3D Tetratricopeptide repeat domain 348 454 IPR011990 GO:0005515
Vivi4g05991 835 NCBIfam pentatricopeptide repeat 647 681 IPR002885 -
Vivi4g05991 835 NCBIfam pentatricopeptide repeat 613 644 IPR002885 -
Vivi4g05991 835 NCBIfam pentatricopeptide repeat 578 611 IPR002885 -
Vivi4g05991 835 NCBIfam pentatricopeptide repeat 354 386 IPR002885 -
Vivi4g05991 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Vivi4g05991 835 Pfam Pentatricopeptide repeat domain 668 728 IPR002885 -
Vivi4g05991 835 Pfam Pentatricopeptide repeat domain 457 500 IPR002885 -
Vivi4g05991 835 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05991 Vivi-Chr4 197163894 197172099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05991 354 784 Glycosyltransferase AT1G05670 20.134 7.05e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05991 - - vun:114194590 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05991 4 197163894 197172099 Vivi4g05991 4 197163894 197172099 ECH