Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05988 ATGGTGAAAGACCCAAGAAGTGGATTTTGTAGTTCCAATTCAATCTTCTACAGCAAGAGAAAACCTCTCTCTCTTCCTCCAAACCACTCCTTAGATGCCACCACTTTCATCTCCTCACGCGCCCATCACGGCAACATCGCCTTCATCGACGCCTCCACCGCCCGTCAGTTCACCTACCAACAACTCTGGCGAGCAGTTGATTCCGTCACCTCCTCACTCTCCACCATGGGAATCCGAAAAGGCGACGTCATCCTCCTCCTCTCTCCCAACTCCATCTATTTCCCTATAGTCTGTCTCTCCGTCATGTCCCTCGGTGCCATCATAACCACCACTAATCCCCTCAACACAACACGCGAAATCGCAAAACAGATCGCCGATTCCAAACCCGTACTTGCCTTCACAACCCCTCAACTCGTTTCCAAAATCACCGGAGCATCACCCTCACTCCCAGTTATTCTCATGGACACCGGCGGTAACTCATCCTCATCATCAACAAACACACTGGAGAAAATGATGGAGAAGGAACCGGAGTTGAGTAGAATGAAAGAGCGAATCAACCAGGACGACACGGCCACTTTACTTTACTCATCCGGAACTACTGGACCCAGCAAAGGAGTAGTTTCTTCACACAAGAATCTCATAGCCATGGTTCAAATCATCATGGATAGGTTCAGTGAATCAAAAGAGAATCGTGGAGAAACATTCATATGCACGGTTCCTATGTTTCACATATACGGTCTCGCCGTGTTCGCTACAGGGCTTCTGGCATTAGGTTCAACCATCGTTGTTCTCTCCAAATTCGAGATGCATGATCTGCTTTCTTCCATTCAGAAATTCAGAGCCTCGTTCTTACCGCTGGTGCCACCCATACTGGTTGCTATGCTGAACAACGCCGATGCGATCAATAGCAAGTACGATTTGAGTTCCCTTCATACGGTGCTGTCCGGTGGGGCTCCTCTGAGTAAAGAAGTTACGGAAGGGTTTATTGAAAAGTACCGTAATGTTAAGATCCTTCAGGGTTATGGTCTGACAGAATCGTCTGGAGTTGGATCTTCCACTGAATCTTTGGAAGAGAGTCGTAGGTACGGCACGGCGGGGCTAGTGTCTTCTTCGACGGAGGCTATGATTGTCGACACTGAAACTGGTAAACCGCTACCGGTTAACCGGACCGGTGAGCTTTGGCTTCGGGGTCCCACCATCATGAAAGGTTATTTTAGCAATGAGGAGGCAACTACATCGACTATTAACTCAGAGGGTTGGTTAAGAACAGGAGATGTTTGCTATATTGATACTGATGGATTCTTGTTTGTTGTGGATCGCTTGAAAGAGCTCATCAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCTTTGTTACTCACTCATCCTGACATTTTGGATGTTGCTGTCATACCGTTCCCAGATAAGGAAGTTGGGCAGTATCCAATGGCATATGTGGTAAGGAAGCCTGGAAGTAACATATCTCAAGCCCAAGTTATGGATTTTGTTGCACAACAGGTGGCTCCATACAAAAAAATTCGAAAAGTGGCATTTATATCTTCCATACCTAAAAATCCATCTGGTAAAATTCTTCGGAAGGATCTCATCGCGCTTGCTTCGTCTAAACTCTGA 1638 0.4689 MVKDPRSGFCSSNSIFYSKRKPLSLPPNHSLDATTFISSRAHHGNIAFIDASTARQFTYQQLWRAVDSVTSSLSTMGIRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTREIAKQIADSKPVLAFTTPQLVSKITGASPSLPVILMDTGGNSSSSSTNTLEKMMEKEPELSRMKERINQDDTATLLYSSGTTGPSKGVVSSHKNLIAMVQIIMDRFSESKENRGETFICTVPMFHIYGLAVFATGLLALGSTIVVLSKFEMHDLLSSIQKFRASFLPLVPPILVAMLNNADAINSKYDLSSLHTVLSGGAPLSKEVTEGFIEKYRNVKILQGYGLTESSGVGSSTESLEESRRYGTAGLVSSSTEAMIVDTETGKPLPVNRTGELWLRGPTIMKGYFSNEEATTSTINSEGWLRTGDVCYIDTDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPDILDVAVIPFPDKEVGQYPMAYVVRKPGSNISQAQVMDFVAQQVAPYKKIRKVAFISSIPKNPSGKILRKDLIALASSKL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05988 545 SUPERFAMILY Acetyl-CoA synthetase-like 35 542 - -
Vivi4g05988 545 Gene3D - 13 442 IPR042099 -
Vivi4g05988 545 Pfam AMP-binding enzyme 40 447 IPR000873 -
Vivi4g05988 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Vivi4g05988 545 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Vivi4g05988 545 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Vivi4g05988 545 CDD 4CL 25 537 - -
Vivi4g05988 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 538 - -
Vivi4g05988 545 Gene3D - 443 544 IPR045851 -
Vivi4g05988 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05988 Vivi-Chr4 197112087 197115041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05988 1 545 Monolignol Biosynthesis Gene Families AT1G20500 65.091 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05988 K10526 - gmx:100811344 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05988 4 197112087 197115041 Vivi4g05988 4 197112087 197115041 ECH