Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05987 ATGGAGGGACAATCTTCAAATGAAGGTTCCAGTACCGGCAATGTCTCAGCAGACTCTTCTGATTCAACTGTTCAGCTCAATATTAAAACTTTAGATTCCCGCATCTACAGTTTTCAAGTTGAAAAAAATATGCCCGTTTCCTTGTTCAAAGAAAAAATTGCCAGTGAAATAGGTGTACCGGTTAATCAGCAACGACTCATATTTAGAGGAAAAGTCCTCAAGGATGAACATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCCGCCCCAGACTTCTGGTGCGGGTTCCGTTGAGACAACTAGTACAAACAGTAACCGAGGAAACGATGCTGGATCAGGAGCTCCTCGTAACCGTGTTGGCCAAATTTCACACAGCGTGGTTCTTGGGACTTTTAATGTGGGGGAACAGGTTGAAGGCACTGCTCAAGACCTTACTAGGGTTATTGGGGCAGTTTTGAATTCTATTGCCAATGGGGGCCAGAGCACAATTAATGTTCCAAATTCCACACAACATCCTCCAGCTCCACCGGGGTTTGAAACTGAAAGAAATCAAAGCCAAGCCGGAAATCAAGCACCATCTGGACAGGCATTTCCTGGTCTAGCATTCCAATCGATGCCTCATGTTGTTCAGATTCCTACCGGTGCAGGAGCAATGCCCATTCCTTCTTTCAATGCTCCAATTCCTGATTCACTGAACACTCTGTCCGAGTTCATAAATCGCATGGAACAAATACTTTCACAGAATGGTTATGGGCCAAATATATCTTCTTCAACCAACACCGGAGATCAACGGGTAGAATTGCCTTCCAATACACAAGGCTTGCCGACACTTGAAGCATTGACCACTGTATTGCATCGTGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGCGCTTTCTCATATTGCAGGACGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTGTTAGAGGTCAAATACAGTCTGAGTCAGTACAGATAGGAATTGCTATGCAACATTTGGGTGCACTTCTACTTGAACTAGGCCGAACTATGTTAACACTGCGAATGGGACGATCTTCTGCAGAATCTGTTGTTAATTCTGGACCAGCAGTTTATATTTCTCCATCAGGACCAAATCCTATAATGGCGCAGCCATTTCCACTCCAGACAAGCTCCCTGTTTGGTGGTTCACTTTCTTCTTCAACTCCTGCAACTTTAGGCACAGTTGGTGTCGGAAGTGCTCCTAGGAACGTGAACATTCACATACATGCTGGTACCTCTCTTGCACCAATTGTTTCAGCCATTGGCTCTAGACCAAATAATGGGGAAGGGACAAGGACCGAGCATCGTAGTGAGTCTGGTTCTGGTGATTCAGGTTCCACTCATGTTTTACCAGTTAGAAATGCCATATCTGCAACTCTCTCATCTAACCCCTCTGGCATCGGAACTGCTGGTAGCGCACCAACTGGGTTTAGTATATCTACTTCTCAGCTACCACCTGATTCAGCTCCATTGTCATCTGTTTTAGCGGAAATTCATTCTCGCCTTAGAAATTCTGTTGGTAATTTGCAAGGAGATAACACAGTTCTGTCAGGCCAAACACAATCAACTAACAGGGACGTGTCTTCTGGATCTGAACTAAGACCTGCACAGGTAAATGAACAGAGAGATACAGTGGAGATGAATGAATGTGGGGCTACCGGTGCATCTTCAGTTGGTTGCACTTCTGAAAGTGGAGCAGAGAAGCCCCAAACTGAGGCAATCAAAACCTGTAGTAATGACGAAAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAAGTTCTTCTAGTGGAGAAACCATGGTAAAATCAGAAAAAGTACAGGATGCTCCATCTGCAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGACTGGGTATGGGTGGTTTGGAGCGTAAGAAACGGACCAGACTTCAACCTCCTGTTGGTAAAGGTGCCGGTGATGGATCCTCTAGTTCTTCCATCAACCAAAGTCAGGAAACAAGGACAGATAGTCAAAATATATTGCAAACACCCGCGGGCCAAGGATCAGCCATTAATTTGATAAATGGGGGTAGACCATCATCTCAGCGACCCATGCCCCCCGGTGGTAGTCAGATTGATGTGGCAGGTTTAATGTCTCAGGTTCTACAGAGTCCTGCTTTGAATGGTTTGTTGGAAGGGTTTTCACATCAAACAGGAGCTGACTCACCTGATGGCTTAAGGAACATATTGCAACAGTTCACACAAAGCCCACAGATGATGAACACAGTCAATCAGATTGCCCAGCAGGTTGACAGTCAGGGTATGGGAAATATGTTATCTGGAATGGGAAGAGGGCAGGGTGGTGGCATCGATTTCTCTAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCACCATTCTCTGCTGCAGAACAAGAAACCCTCGCACCCTTCAGGAATGCAAATTCTGATAATCAAAACTTACAGCTTGACCTTCAACCAGTGGTAGAGAGGATTGATCGTCTGAGTCCACCTGCAGACATCTTCCGTGCTGTAGCTGAAAATGCCGTTCAGCAGTCTGGCAGTGGAAGTGCTTCTGATGACCTTCTGGATGAGTTATGTTGCAATGAAAGTCTTGCCAGTGAATATTTGGAGATGTTGCGACATGATGTAGGTCAGTTGCTTGAACAACGTTCCAAAAGGGACAAGTCATAA 2799 0.4512 MEGQSSNEGSSTGNVSADSSDSTVQLNIKTLDSRIYSFQVEKNMPVSLFKEKIASEIGVPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNPPQTSGAGSVETTSTNSNRGNDAGSGAPRNRVGQISHSVVLGTFNVGEQVEGTAQDLTRVIGAVLNSIANGGQSTINVPNSTQHPPAPPGFETERNQSQAGNQAPSGQAFPGLAFQSMPHVVQIPTGAGAMPIPSFNAPIPDSLNTLSEFINRMEQILSQNGYGPNISSSTNTGDQRVELPSNTQGLPTLEALTTVLHRAEQLLSGQAVSALSHIAGRMEREGTSADLGVRGQIQSESVQIGIAMQHLGALLLELGRTMLTLRMGRSSAESVVNSGPAVYISPSGPNPIMAQPFPLQTSSLFGGSLSSSTPATLGTVGVGSAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGTRTEHRSESGSGDSGSTHVLPVRNAISATLSSNPSGIGTAGSAPTGFSISTSQLPPDSAPLSSVLAEIHSRLRNSVGNLQGDNTVLSGQTQSTNRDVSSGSELRPAQVNEQRDTVEMNECGATGASSVGCTSESGAEKPQTEAIKTCSNDERDVLVDKFVSSSSNQDLQSSSSGETMVKSEKVQDAPSASERRDVTEPAKTAPLGLGMGGLERKKRTRLQPPVGKGAGDGSSSSSINQSQETRTDSQNILQTPAGQGSAINLINGGRPSSQRPMPPGGSQIDVAGLMSQVLQSPALNGLLEGFSHQTGADSPDGLRNILQQFTQSPQMMNTVNQIAQQVDSQGMGNMLSGMGRGQGGGIDFSRMFQQMMPIVSQALGGGNPPSPFSAAEQETLAPFRNANSDNQNLQLDLQPVVERIDRLSPPADIFRAVAENAVQQSGSGSASDDLLDELCCNESLASEYLEMLRHDVGQLLEQRSKRDKS 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05987 932 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vivi4g05987 932 MobiDBLite consensus disorder prediction 608 629 - -
Vivi4g05987 932 Gene3D - 12 107 - -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 172 209 - -
Vivi4g05987 932 FunFam Large proline-rich protein BAG6 16 109 - -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 462 509 - -
Vivi4g05987 932 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vivi4g05987 932 MobiDBLite consensus disorder prediction 95 122 - -
Vivi4g05987 932 SMART ubq_7 24 95 IPR000626 GO:0005515
Vivi4g05987 932 MobiDBLite consensus disorder prediction 529 562 - -
Vivi4g05987 932 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 930 - -
Vivi4g05987 932 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 574 593 - -
Vivi4g05987 932 SUPERFAMILY Ubiquitin-like 19 100 IPR029071 -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 440 509 - -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 574 731 - -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 677 726 - -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 1 23 - -
Vivi4g05987 932 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vivi4g05987 932 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vivi4g05987 932 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 91 129 - -
Vivi4g05987 932 MobiDBLite consensus disorder prediction 190 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05987 Vivi-Chr4 197092034 197101196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05987 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 3.55e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05987 - - mtr:25482215 1326.23