Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05981 ATGGGTAACTCTACCAGTGAAACTGATCAACCCAATCAACTAACTGATCTCGTCATCAATCCTTCTTCAAACCCAACGCCGGGCGCAGTTTTGCGAGATGGAAAGGAAATTCTTTTTCAGGCATTTAACTGGGAGTCTCACAAATACAATTGGTGGGAAACTTTAGAAACCAAAATTCCGGACATAGCTAAAGCTGGAATCACTTCAGCATGGTTGCCACCACCAACTCATTCCTTCGCGCCTGAAGGTTATACTCCTCAGGACCTTTACTCTCTTAATACTAAATATGGTTCTGAGCATCAATTAAAAGCCTTACTTCACAAGATGAAGCAACACAAAGTCAGAGCAATGGCTGACATAGTTATCAATCATCGCGTTGGCACCACCCGAGGACGCGGAGGGATCTACAATCGCTTTGATGGAATTTCATTACCGTGGGATGAACGTGCTGTAACATCTTCTACTGGTGGACTGGGTAAACAAAACACAGGGGCCATTTTCCACGGGTTTCCCAATATCGATCATACTCAAGACTTTGTGAGAAAGGATATCATAGGATGGCTTCAGTTTCTACGCCATAAAGTAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGCTATTCACCAAAATATGTGAAAGAATATATTGAAGGAGCAAAGCCAGTGTTCTCTGTTGGGGAGTATTGGGATACTTGCAACTACAACGGTTCTAGTTTGGACTATAACCAAGATAGCCATAGGCAACGAATAGTTAATTGGATTGATGGCACTGGACAGCTCTCAACTGCATTTGACTTCACAACAAAGGGAATTCTCCAGGAAGCTGTCAAGAGAGAATATTGGCGACTGTGTGATGCTCAAGGAAAGCCGCCTGGAGTGATTGGGTGGTGGCCTTCAAGATCAGCTACATTTATAGATAATCATGATACTGGCTCAACTCAGGCTCATTGGCCCTTTCCTTCTGATCATGTTATGGAGGGATATGCTTACATATTGACTCATCCTGGGATACCTACAATTTTCTATGACCACTTTTATGACTGGAACCAATCAGTTCATGATCAGATTGTGAAGTTGATTGACACTCGCAAGCGTCAAGGTATTCATAGCAGATCACCTATTAGGATTCTGGAAGCCAAGCACAATGTATACGCTGCAATCATCGGGGAAAAGCTCTGCATGAAGATTGGAGATGGTTCATGGAGCCCATCTGGGAAGGAATGGACTCTATCTACCAGTGGCCATAACTATGCTGTATGGCACAAGTAG 1272 0.4324 MGNSTSETDQPNQLTDLVINPSSNPTPGAVLRDGKEILFQAFNWESHKYNWWETLETKIPDIAKAGITSAWLPPPTHSFAPEGYTPQDLYSLNTKYGSEHQLKALLHKMKQHKVRAMADIVINHRVGTTRGRGGIYNRFDGISLPWDERAVTSSTGGLGKQNTGAIFHGFPNIDHTQDFVRKDIIGWLQFLRHKVGFQDFRFDFAKGYSPKYVKEYIEGAKPVFSVGEYWDTCNYNGSSLDYNQDSHRQRIVNWIDGTGQLSTAFDFTTKGILQEAVKREYWRLCDAQGKPPGVIGWWPSRSATFIDNHDTGSTQAHWPFPSDHVMEGYAYILTHPGIPTIFYDHFYDWNQSVHDQIVKLIDTRKRQGIHSRSPIRILEAKHNVYAAIIGEKLCMKIGDGSWSPSGKEWTLSTSGHNYAVWHK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05981 423 SUPERFAMILY (Trans)glycosidases 43 355 IPR017853 -
Vivi4g05981 423 Gene3D Glycosidases 36 368 - -
Vivi4g05981 423 SMART alpha-amyl_c2 365 423 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vivi4g05981 423 Gene3D - 369 423 IPR013780 -
Vivi4g05981 423 PANTHER ALPHA-AMYLASE 38 422 - -
Vivi4g05981 423 CDD AmyAc_arch_bac_plant_AmyA 37 375 - -
Vivi4g05981 423 PRINTS Alpha-amylase signature 113 124 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vivi4g05981 423 PRINTS Alpha-amylase signature 197 208 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vivi4g05981 423 PRINTS Alpha-amylase signature 300 312 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vivi4g05981 423 PIRSF Alpha-amylase_plant 24 423 IPR013775 GO:0004556|GO:0005509|GO:0005975
Vivi4g05981 423 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g05981 423 Pfam Alpha amylase, catalytic domain 57 124 IPR006047 GO:0005975
Vivi4g05981 423 Pfam Alpha-amylase C-terminal beta-sheet domain 366 422 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vivi4g05981 423 SMART aamy 36 376 IPR006047 GO:0005975
Vivi4g05981 423 SUPERFAMILY Glycosyl hydrolase domain 369 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05981 Vivi-Chr4 197014944 197018347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05981 1 423 Glycoside Hydrolase AT1G76130 74.232 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05981 K01176 - gmx:100813490 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05981 4 197014944 197018347 Vivi4g05981 4 197014944 197018347 ECH