LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g05980	ATGGGAGATACAGAGAGTTGCAACAATAGAGGTTTGAATATCAATTACCATGGTCCAATTCAGAGTCTGAAAATTGAAGTTTACAAGGACATTCTCACTCGACTCATGGAATTGAATGCTCCTGAGGTCACTCTTCCTCATTTTCAAGACGAACTCTGGGTTCACTTCAATACTCTTCCAACTAGGTATGCGCTGGAAATGAATGTTGAAAAGGCGCAAGATGTTCTTATGCATAAAAGATTGCAGAATATGGCAAGAACTATTGCTACTAGACCTGCAATTGAAGTCCGTCTTCTCCAGGTTCGCTCTCCTTCTGGTGTGCATTCTAACAAATCCCTTCATTCCAACATACAAACACAAATCAGTTGCCAAGTCTCTGATTTTCCATGCAACATGAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCATTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTAGATGGTTGGGCAGGCCAGGATACTGAGAGGCTCAAGCATGAAGTGATAAAGAAAATGCAGAAACTCGAGAAAAATCAATGGTTTCCCTTGTCTCCTTTTCCCAAGGAGACCGAGATATCAAAACATATTCCAAAAAAGAAAATTAAGAAACTCGAGAAGCAACCCTGGTGCAGTCTTCCTAAGGAGAAACTAGAGAAAATTGGAATGAACTATAAGCCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGAGAGGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCTATCAAAGTCTTTAAGAATGGTAGTCTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATTCTGAGTAATGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCGGCTACGAAACCAAACTTTCATTTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCATACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAAATATTTGCATCAGAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGCAGGTAGTTAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAGACAAATCTGGCATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAATCACAAAGCTGATGTTTTCAGCTTTGGGATTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCTTATGAAGATTTGTCCCCATTGCAAGCAGCAGTTGGAGTAGTGCATAAGGGTATCCTATCGTATCAATAA	1458	0.3937	MGDTESCNNRGLNINYHGPIQSLKIEVYKDILTRLMELNAPEVTLPHFQDELWVHFNTLPTRYALEMNVEKAQDVLMHKRLQNMARTIATRPAIEVRLLQVRSPSGVHSNKSLHSNIQTQISCQVSDFPCNMRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVIKKMQKLEKNQWFPLSPFPKETEISKHIPKKKIKKLEKQPWCSLPKEKLEKIGMNYKPISRNYVWEIDASCLRYERKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSNVQHKNVIKFIGAATKPNFHFVTEYMSGGNMYDFLHIQKTILTLPSLLKVAIDVSQGVKYLHQNNIIHRDLKTANLLMDEKGQVVKVADFGVARLQDKSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGIILWELLTRKLPYEDLSPLQAAVGVVHKGILSYQ	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g05980	485	SMART	serkin_6	269	482	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05980	485	SUPERFAMILY	ACT-like	133	203	IPR045865	-
	Vivi4g05980	485	Pfam	Protein tyrosine and serine/threonine kinase	270	472	IPR001245	GO:0004672\|GO:0006468
	Vivi4g05980	485	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	385	397	IPR008271	GO:0004672\|GO:0006468
	Vivi4g05980	485	SUPERFAMILY	Protein kinase-like (PK-like)	258	477	IPR011009	-
	Vivi4g05980	485	Gene3D	Transferase(Phosphotransferase) domain 1	347	483	-	-
	Vivi4g05980	485	ProSiteProfiles	Protein kinase domain profile.	269	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05980	485	ProSiteProfiles	ACT domain profile.	137	212	IPR002912	-
	Vivi4g05980	485	CDD	STKc_MAP3K-like	275	480	-	-
	Vivi4g05980	485	PRINTS	Tyrosine kinase catalytic domain signature	426	436	IPR001245	GO:0004672\|GO:0006468
	Vivi4g05980	485	PRINTS	Tyrosine kinase catalytic domain signature	379	397	IPR001245	GO:0004672\|GO:0006468
	Vivi4g05980	485	PRINTS	Tyrosine kinase catalytic domain signature	445	467	IPR001245	GO:0004672\|GO:0006468
	Vivi4g05980	485	PRINTS	Tyrosine kinase catalytic domain signature	342	355	IPR001245	GO:0004672\|GO:0006468
	Vivi4g05980	485	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	144	480	-	-
	Vivi4g05980	485	Gene3D	Phosphorylase Kinase; domain 1	257	346	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g05980	Vivi-Chr4	196994020	197001098	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g05980	3	481	MAP Kinase Kinase Kinase	AT2G17700	50.965	1.41e-168	484

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vivi4g05980		PK_Tyr_Ser-Thr	1.6e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g05980	-		-	vra:106761427	554.673