Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05979 ATGGGAGATACAGAGAGTTGCAACAATAGAGGTTTGAATATCAATTACCATGGTCCAATTCAGAGTCTGAAAATTGAAGTTTACAAGGACATTCTCACTCGACTCATGGAATTGAATGCTCCTGAGGTCACTCTTCCTCATTTTCAAGACGAACTCTGGGTTCACTTCAATACTCTTCCAACTAGGTATGCGCTGGAAATGAATGTTGAAAAGGCGCAAGATGTTCTTATGCATAAAAGATTGCAGAATATGGCAAGAACTATTGCTACTAGACCTGCAATTGAAGTCCGTCTTCTCCAGGTTCGCTCTCCTTCTGGTGTGCATTCTAACAAATCCCTTCATTCCAACATACAAACACAAATCAGTTGCCAAGTCTCTGATTTTCCATGCAACATGAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCATTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTAGATGGTTGGGCAGGCCAGGATACTGAGAGGCTCAAGCATGAAGTGATAAAGAAAATGCAGAAACTCGAGAAAAATCAATGGTTTCCCTTGTCTCCTTTTCCCAAGGAGACCGAGATATCAAAACATATTCCAAAAAAGAAAATTAAGAAACTCGAGAAGCAACCCTGGTGCAGTCTTCCTAAGGAGAAACTAGAGAAAATTGGAATGAACTATAAGCCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGAGAGGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCTATCAAAGTCTTTAAGAATGGTAGTCTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATTCTGAGTAATGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCGGCTACGAAACCAAACTTTCATTTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCATACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAAATATTTGCATCAGAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGCAGGTAGTTAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAGACAAATCTGGCATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGCTTCCTTATGAAGATTTGTCCCCATTGCAAGCAGCAGTTGGAGTAGTGCATAAGGGTATCCTATCGTATCAATAA 1377 0.3958 MGDTESCNNRGLNINYHGPIQSLKIEVYKDILTRLMELNAPEVTLPHFQDELWVHFNTLPTRYALEMNVEKAQDVLMHKRLQNMARTIATRPAIEVRLLQVRSPSGVHSNKSLHSNIQTQISCQVSDFPCNMRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVIKKMQKLEKNQWFPLSPFPKETEISKHIPKKKIKKLEKQPWCSLPKEKLEKIGMNYKPISRNYVWEIDASCLRYERKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSNVQHKNVIKFIGAATKPNFHFVTEYMSGGNMYDFLHIQKTILTLPSLLKVAIDVSQGVKYLHQNNIIHRDLKTANLLMDEKGQVVKVADFGVARLQDKSGIMTAETGTYRWMAPELPYEDLSPLQAAVGVVHKGILSYQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05979 458 SUPERFAMILY Protein kinase-like (PK-like) 258 436 IPR011009 -
Vivi4g05979 458 Gene3D Transferase(Phosphotransferase) domain 1 347 445 - -
Vivi4g05979 458 Gene3D Phosphorylase Kinase; domain 1 257 346 - -
Vivi4g05979 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Vivi4g05979 458 Pfam Protein kinase domain 272 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05979 458 ProSiteProfiles Protein kinase domain profile. 269 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05979 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 144 435 - -
Vivi4g05979 458 ProSiteProfiles ACT domain profile. 137 212 IPR002912 -
Vivi4g05979 458 SMART serkin_6 269 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05979 458 SUPERFAMILY ACT-like 133 203 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05979 Vivi-Chr4 196994020 197001098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05979 3 454 MAP Kinase Kinase Kinase AT2G17700 46.911 1.85e-144 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi4g05979 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05979 - - vra:106761427 493.426