Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05977 ATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCATTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTAGATGGTTGGGCAGGCCAGGATACTGAGAGGCTCAAGCATGAAGTGATAAAGAAAATGCAGAAACTCGAGAAAAATCAATGGTTTCCCTTGTCTCCTTTTCCCAAGGAGACCGAGATATCAAAACATATTCCAAAAAAGAAAATTAAGAAACTCGAGAAGCAACCCTGGTGCAGTCTTCCTAAGGAGAAACTAGAGAAAATTGGAATGAACTATAAGCCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGAGAGGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCTATCAAAGTCTTTAAGAATGGTAGTCTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATTCTGAGTAATGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCGGCTACGAAACCAAACTTTCATTTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCATACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAAATATTTGCATCAGAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGCAGGTAGTTAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAGACAAATCTGGCATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAATCACAAAGCTGATGTTTTCAGCTTTGGGATTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCTTATGAAGATTTGTCCCCATTGCAAGCAGCAGTTGGAGTAGTGCATAAGGATTTGAGGCCTGAAATTCCAAGGGATGCACATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCATAAAGATCCGTCTTTAAGGCCCGATTTCTCAGAAATTCTTAAGTTTCTACAGCACATGAACAACATGATTGCAGGGAAAAAGAAGGTAAAGGTTAAAGGGAAGATGTGA 1212 0.3927 MHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVIKKMQKLEKNQWFPLSPFPKETEISKHIPKKKIKKLEKQPWCSLPKEKLEKIGMNYKPISRNYVWEIDASCLRYERKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSNVQHKNVIKFIGAATKPNFHFVTEYMSGGNMYDFLHIQKTILTLPSLLKVAIDVSQGVKYLHQNNIIHRDLKTANLLMDEKGQVVKVADFGVARLQDKSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGIILWELLTRKLPYEDLSPLQAAVGVVHKDLRPEIPRDAHPKLVELLHWCWHKDPSLRPDFSEILKFLQHMNNMIAGKKKVKVKGKM 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05977 403 ProSiteProfiles ACT domain profile. 3 78 IPR002912 -
Vivi4g05977 403 CDD STKc_MAP3K-like 141 384 - -
Vivi4g05977 403 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 74 387 - -
Vivi4g05977 403 Gene3D Transferase(Phosphotransferase) domain 1 213 402 - -
Vivi4g05977 403 ProSiteProfiles Protein kinase domain profile. 135 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05977 403 SMART serkin_6 135 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05977 403 SUPERFAMILY Protein kinase-like (PK-like) 116 384 IPR011009 -
Vivi4g05977 403 Gene3D Phosphorylase Kinase; domain 1 123 212 - -
Vivi4g05977 403 SUPERFAMILY ACT-like 2 69 IPR045865 -
Vivi4g05977 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vivi4g05977 403 PRINTS Tyrosine kinase catalytic domain signature 208 221 IPR001245 GO:0004672|GO:0006468
Vivi4g05977 403 PRINTS Tyrosine kinase catalytic domain signature 355 377 IPR001245 GO:0004672|GO:0006468
Vivi4g05977 403 PRINTS Tyrosine kinase catalytic domain signature 245 263 IPR001245 GO:0004672|GO:0006468
Vivi4g05977 403 PRINTS Tyrosine kinase catalytic domain signature 311 333 IPR001245 GO:0004672|GO:0006468
Vivi4g05977 403 PRINTS Tyrosine kinase catalytic domain signature 292 302 IPR001245 GO:0004672|GO:0006468
Vivi4g05977 403 Pfam Protein tyrosine and serine/threonine kinase 136 384 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05977 Vivi-Chr4 196993524 196999305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05977 1 400 MAP Kinase Kinase Kinase AT4G35780 55.721 6.83e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi4g05977 PK_Tyr_Ser-Thr 8.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05977 - - gmx:100818047 510.76