Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05975 ATGTTGAAAAGGCGCAAGATGTTCTTATGCATAAAAGATTGCAGAATATGGCAAGAACTATTGCTACTAGACCTGCAATTGAAGTCCGTCTTCTCCAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCATTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTAGATGGTTGGGCAGGCCAGGATACTGAGAGGCTCAAGCATGAAGTGATAAAGAAAATGCAGAAACTCGAGAAAAATCAATGGTTTCCCTTGTCTCCTTTTCCCAAGGAGACCGAGATATCAAAACATATTCCAAAAAAGAAAATTAAGAAACTCGAGAAGCAACCCTGGTGCAGTCTTCCTAAGGAGAAACTAGAGAAAATTGGAATGAACTATAAGCCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGAGAGGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCTATCAAAGTCTTTAAGAATGGTAGTCTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATTCTGAGTAATGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCGGCTACGAAACCAAACTTTCATTTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCATACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAAATATTTGCATCAGAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGGTAGTTAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAGACAAATCTGGCATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAATCACAAAGCTGATGTTTTCAGCTTTGGGATTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCTTATGAAGATTTGTCCCCATTGCAAGCAGCAGTTGGAGTAGTGCATAAGGATTTGAGGCCTGAAATTCCAAGGGATGCACATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCATAAAGATCCGTCTTTAAGGCCCGATTTCTCAGAAATTCTTAAGTTTCTACAGCACATGAACAACATGATTGCAGGGAAAAAGAAGGTAAAGGTTAAAGGGAAGATGTGA 1311 0.3928 MLKRRKMFLCIKDCRIWQELLLLDLQLKSVFSRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVIKKMQKLEKNQWFPLSPFPKETEISKHIPKKKIKKLEKQPWCSLPKEKLEKIGMNYKPISRNYVWEIDASCLRYERKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSNVQHKNVIKFIGAATKPNFHFVTEYMSGGNMYDFLHIQKTILTLPSLLKVAIDVSQGVKYLHQNNIIHRDLKTANLLMDEKGVVKVADFGVARLQDKSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGIILWELLTRKLPYEDLSPLQAAVGVVHKDLRPEIPRDAHPKLVELLHWCWHKDPSLRPDFSEILKFLQHMNNMIAGKKKVKVKGKM 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05975 436 SUPERFAMILY ACT-like 35 103 IPR045865 -
Vivi4g05975 436 SUPERFAMILY Protein kinase-like (PK-like) 151 417 IPR011009 -
Vivi4g05975 436 Gene3D Transferase(Phosphotransferase) domain 1 247 435 - -
Vivi4g05975 436 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 91 420 - -
Vivi4g05975 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Vivi4g05975 436 ProSiteProfiles ACT domain profile. 37 112 IPR002912 -
Vivi4g05975 436 ProSiteProfiles Protein kinase domain profile. 169 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05975 436 Gene3D Phosphorylase Kinase; domain 1 157 246 - -
Vivi4g05975 436 Pfam Protein tyrosine and serine/threonine kinase 170 417 IPR001245 GO:0004672|GO:0006468
Vivi4g05975 436 SMART serkin_6 169 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05975 436 CDD STKc_MAP3K-like 175 417 - -
Vivi4g05975 436 PRINTS Tyrosine kinase catalytic domain signature 242 255 IPR001245 GO:0004672|GO:0006468
Vivi4g05975 436 PRINTS Tyrosine kinase catalytic domain signature 344 366 IPR001245 GO:0004672|GO:0006468
Vivi4g05975 436 PRINTS Tyrosine kinase catalytic domain signature 388 410 IPR001245 GO:0004672|GO:0006468
Vivi4g05975 436 PRINTS Tyrosine kinase catalytic domain signature 325 335 IPR001245 GO:0004672|GO:0006468
Vivi4g05975 436 PRINTS Tyrosine kinase catalytic domain signature 279 297 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05975 Vivi-Chr4 196993524 197000923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05975 32 433 MAP Kinase Kinase Kinase AT4G35780 56.188 6.69e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi4g05975 PK_Tyr_Ser-Thr 8.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05975 - - gmx:100818047 521.546