Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05973 ATGGGAGATACAGAGAGTTGCAACAATAGAGGTTTGAATATCAATTACCATGGTCCAATTCAGAGTCTGAAAATTGAAGTTTACAAGGACATTCTCACTCGACTCATGGAATTGAATGCTCCTGAGGTCACTCTTCCTCATTTTCAAGACGAACTCTGGGTTCACTTCAATACTCTTCCAACTAGGTATGCGCTGGAAATGAATGTTGAAAAGGCGCAAGATGTTCTTATGCATAAAAGATTGCAGAATATGGCAAGAACTATTGCTACTAGACCTGCAATTGAAGTCCGTCTTCTCCAGGTTCGCTCTCCTTCTGGTGTGCATTCTAACAAATCCCTTCATTCCAACATACAAACACAAATCAGTTGCCAAGTCTCTGATTTTCCATGCAACATGAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCATTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTAGATGGTTGGGCAGGCCAGGATACTGAGAGGCTCAAGCATGAAGTGATAAAGAAAATGCAGAAACTCGAGAAAAATCAATGGTTTCCCTTGTCTCCTTTTCCCAAGGAGACCGAGATATCAAAACATATTCCAAAAAAGAAAATTAAGAAACTCGAGAAGCAACCCTGGTGCAGTCTTCCTAAGGAGAAACTAGAGAAAATTGGAATGAACTATAAGCCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGAGAGGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCTATCAAAGTCTTTAAGAATGGTAGTCTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATTCTGAGTAATGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCGGCTACGAAACCAAACTTTCATTTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCATACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAAATATTTGCATCAGAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGGTAGTTAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAGACAAATCTGGCATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGCTTCCTTATGAAGATTTGTCCCCATTGCAAGCAGCAGTTGGAGTAGTGCATAAGGATTTGAGGCCTGAAATTCCAAGGGATGCACATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCATAAAGATCCGTCTTTAAGGCCCGATTTCTCAGAAATTCTTAAGTTTCTACAGCACATGAACAACATGATTGCAGGGAAAAAGAAGGTAAAGGTTAAAGGGAAGATGTGA 1530 0.398 MGDTESCNNRGLNINYHGPIQSLKIEVYKDILTRLMELNAPEVTLPHFQDELWVHFNTLPTRYALEMNVEKAQDVLMHKRLQNMARTIATRPAIEVRLLQVRSPSGVHSNKSLHSNIQTQISCQVSDFPCNMRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVIKKMQKLEKNQWFPLSPFPKETEISKHIPKKKIKKLEKQPWCSLPKEKLEKIGMNYKPISRNYVWEIDASCLRYERKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSNVQHKNVIKFIGAATKPNFHFVTEYMSGGNMYDFLHIQKTILTLPSLLKVAIDVSQGVKYLHQNNIIHRDLKTANLLMDEKGVVKVADFGVARLQDKSGIMTAETGTYRWMAPELPYEDLSPLQAAVGVVHKDLRPEIPRDAHPKLVELLHWCWHKDPSLRPDFSEILKFLQHMNNMIAGKKKVKVKGKM 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05973 509 PRINTS Tyrosine kinase catalytic domain signature 461 483 IPR001245 GO:0004672|GO:0006468
Vivi4g05973 509 PRINTS Tyrosine kinase catalytic domain signature 342 355 IPR001245 GO:0004672|GO:0006468
Vivi4g05973 509 PRINTS Tyrosine kinase catalytic domain signature 379 397 IPR001245 GO:0004672|GO:0006468
Vivi4g05973 509 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 157 493 - -
Vivi4g05973 509 Gene3D Transferase(Phosphotransferase) domain 1 438 508 - -
Vivi4g05973 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Vivi4g05973 509 SMART serkin_6 269 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05973 509 Gene3D Phosphorylase Kinase; domain 1 257 345 - -
Vivi4g05973 509 ProSiteProfiles ACT domain profile. 137 212 IPR002912 -
Vivi4g05973 509 SUPERFAMILY Protein kinase-like (PK-like) 251 490 IPR011009 -
Vivi4g05973 509 SUPERFAMILY ACT-like 133 203 IPR045865 -
Vivi4g05973 509 CDD STKc_MAP3K-like 275 490 - -
Vivi4g05973 509 ProSiteProfiles Protein kinase domain profile. 269 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05973 509 Pfam Protein tyrosine and serine/threonine kinase 435 490 IPR001245 GO:0004672|GO:0006468
Vivi4g05973 509 Pfam Protein tyrosine and serine/threonine kinase 270 434 IPR001245 GO:0004672|GO:0006468
Vivi4g05973 509 Gene3D Transferase(Phosphotransferase) domain 1 346 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05973 Vivi-Chr4 196993524 197001097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05973 5 506 MAP Kinase Kinase Kinase AT4G35780 46.410 2.09e-164 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi4g05973 PK_Tyr_Ser-Thr 4.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05973 - - gmx:100818047 576.63