Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05972 ATGGGAGATACAGAGAGTTGCAACAATAGAGGTTTGAATATCAATTACCATGGTCCAATTCAGAGTCTGAAAATTGAAGTTTACAAGGACATTCTCACTCGACTCATGGAATTGAATGCTCCTGAGGTCACTCTTCCTCATTTTCAAGACGAACTCTGGGTTCACTTCAATACTCTTCCAACTAGGTATGCGCTGGAAATGAATGTTGAAAAGGCGCAAGATGTTCTTATGCATAAAAGATTGCAGAATATGGCAAGAACTATTGCTACTAGACCTGCAATTGAAGTCCGTCTTCTCCAGGTTCGCTCTCCTTCTGGTGTGCATTCTAACAAATCCCTTCATTCCAACATACAAACACAAATCAGTTGCCAAGTCTCTGATTTTCCATGCAACATGAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCATTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTAGATGGTTGGGCAGGCCAGGATACTGAGAGGCTCAAGCATGAAGTGATAAAGAAAATGCAGAAACTCGAGAAAAATCAATGGTTTCCCTTGTCTCCTTTTCCCAAGGAGACCGAGATATCAAAACATATTCCAAAAAAGAAAATTAAGAAACTCGAGAAGCAACCCTGGTGCAGTCTTCCTAAGGAGAAACTAGAGAAAATTGGAATGAACTATAAGCCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGAGAGGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCTATCAAAGTCTTTAAGAATGGTAGTCTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATTCTGAGTAATGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCGGCTACGAAACCAAACTTTCATTTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCATACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAAATATTTGCATCAGAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGCAGGTAGTTAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAGACAAATCTGGCATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAATCACAAAGCTGATGTTTTCAGCTTTGGGATTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCTTATGAAGATTTGTCCCCATTGCAAGCAGCAGTTGGAGTAGTGCATAAGGATTTGAGGCCTGAAATTCCAAGGGATGCACATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCATAAAGATCCGTCTTTAAGGCCCGATTTCTCAGAAATTCTTAAGTTTCTACAGCACATGAACAACATGATTGCAGGGAAAAAGAAGGTAAAGGTTAAAGGGAAGATGTGA 1614 0.3965 MGDTESCNNRGLNINYHGPIQSLKIEVYKDILTRLMELNAPEVTLPHFQDELWVHFNTLPTRYALEMNVEKAQDVLMHKRLQNMARTIATRPAIEVRLLQVRSPSGVHSNKSLHSNIQTQISCQVSDFPCNMRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVIKKMQKLEKNQWFPLSPFPKETEISKHIPKKKIKKLEKQPWCSLPKEKLEKIGMNYKPISRNYVWEIDASCLRYERKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSNVQHKNVIKFIGAATKPNFHFVTEYMSGGNMYDFLHIQKTILTLPSLLKVAIDVSQGVKYLHQNNIIHRDLKTANLLMDEKGQVVKVADFGVARLQDKSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGIILWELLTRKLPYEDLSPLQAAVGVVHKDLRPEIPRDAHPKLVELLHWCWHKDPSLRPDFSEILKFLQHMNNMIAGKKKVKVKGKM 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05972 537 SUPERFAMILY Protein kinase-like (PK-like) 251 518 IPR011009 -
Vivi4g05972 537 ProSiteProfiles Protein kinase domain profile. 269 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05972 537 Gene3D Transferase(Phosphotransferase) domain 1 347 536 - -
Vivi4g05972 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Vivi4g05972 537 Pfam Protein tyrosine and serine/threonine kinase 270 518 IPR001245 GO:0004672|GO:0006468
Vivi4g05972 537 PRINTS Tyrosine kinase catalytic domain signature 426 436 IPR001245 GO:0004672|GO:0006468
Vivi4g05972 537 PRINTS Tyrosine kinase catalytic domain signature 342 355 IPR001245 GO:0004672|GO:0006468
Vivi4g05972 537 PRINTS Tyrosine kinase catalytic domain signature 379 397 IPR001245 GO:0004672|GO:0006468
Vivi4g05972 537 PRINTS Tyrosine kinase catalytic domain signature 445 467 IPR001245 GO:0004672|GO:0006468
Vivi4g05972 537 PRINTS Tyrosine kinase catalytic domain signature 489 511 IPR001245 GO:0004672|GO:0006468
Vivi4g05972 537 ProSiteProfiles ACT domain profile. 137 212 IPR002912 -
Vivi4g05972 537 SUPERFAMILY ACT-like 133 203 IPR045865 -
Vivi4g05972 537 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 147 521 - -
Vivi4g05972 537 SMART serkin_6 269 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05972 537 CDD STKc_MAP3K-like 275 518 - -
Vivi4g05972 537 Gene3D Phosphorylase Kinase; domain 1 257 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05972 Vivi-Chr4 196993524 197001098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05972 5 534 MAP Kinase Kinase Kinase AT4G35780 49.650 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi4g05972 PK_Tyr_Ser-Thr 1.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05972 - - vra:106761427 615.535