Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05971 ATGGGAGATACAGAGAGTTGCAACAATAGAGGTTTGAATATCAATTACCATGGTCCAATTCAGAGTCTGAAAATTGAAGTTTACAAGGACATTCTCACTCGACTCATGGAATTGAATGCTCCTGAGGTCACTCTTCCTCATTTTCAAGACGAACTCTGGGTTCACTTCAATACTCTTCCAACTAGGTATGCGCTGGAAATGAATGTTGAAAAGGCGCAAGATGTTCTTATGCATAAAAGATTGCAGAATATGGCAAGAACTATTGCTACTAGACCTGCAATTGAAGTCCGTCTTCTCCAGGTTCGCTCTCCTTCTGGTGTGCATTCTAACAAATCCCTTCATTCCAACATACAAACACAAATCAGTTGCCAAGTCTCTGATTTTCCATGCAACATGAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCATTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTAGATGGTTGGGCAGGCCAGGATACTGAGAGGCTCAAGCATGAAGTGATAAAGAAAATGCAGAAACTCGAGAAAAATCAATGGTTTCCCTTGTCTCCTTTTCCCAAGGAGACCGAGATATCAAAACATATTCCAAAAAAGAAAATTAAGAAACTCGAGAAGCAACCCTGGTGCAGTCTTCCTAAGGAGAAACTAGAGAAAATTGGAATGAACTATAAGCCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGAGAGGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCTATCAAAGTCTTTAAGAATGGTAGTCTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATTCTGAGTAATGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCGGCTACGAAACCAAACTTTCATTTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCATACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAAATATTTGCATCAGAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGCAGGTAGTTAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAGACAAATCTGGCATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGCTTCCTTATGAAGATTTGTCCCCATTGCAAGCAGCAGTTGGAGTAGTGCATAAGGATTTGAGGCCTGAAATTCCAAGGGATGCACATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCATAAAGATCCGTCTTTAAGGCCCGATTTCTCAGAAATTCTTAAGTTTCTACAGCACATGAACAACATGATTGCAGGGAAAAAGAAGGTAAAGGTTAAAGGGAAGATGTGA 1533 0.3986 MGDTESCNNRGLNINYHGPIQSLKIEVYKDILTRLMELNAPEVTLPHFQDELWVHFNTLPTRYALEMNVEKAQDVLMHKRLQNMARTIATRPAIEVRLLQVRSPSGVHSNKSLHSNIQTQISCQVSDFPCNMRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVIKKMQKLEKNQWFPLSPFPKETEISKHIPKKKIKKLEKQPWCSLPKEKLEKIGMNYKPISRNYVWEIDASCLRYERKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSNVQHKNVIKFIGAATKPNFHFVTEYMSGGNMYDFLHIQKTILTLPSLLKVAIDVSQGVKYLHQNNIIHRDLKTANLLMDEKGQVVKVADFGVARLQDKSGIMTAETGTYRWMAPELPYEDLSPLQAAVGVVHKDLRPEIPRDAHPKLVELLHWCWHKDPSLRPDFSEILKFLQHMNNMIAGKKKVKVKGKM 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05971 510 CDD STKc_MAP3K-like 275 491 - -
Vivi4g05971 510 Pfam Protein tyrosine and serine/threonine kinase 436 491 IPR001245 GO:0004672|GO:0006468
Vivi4g05971 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Vivi4g05971 510 Gene3D Phosphorylase Kinase; domain 1 257 346 - -
Vivi4g05971 510 PRINTS Tyrosine kinase catalytic domain signature 342 355 IPR001245 GO:0004672|GO:0006468
Vivi4g05971 510 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672|GO:0006468
Vivi4g05971 510 PRINTS Tyrosine kinase catalytic domain signature 379 397 IPR001245 GO:0004672|GO:0006468
Vivi4g05971 510 SMART serkin_6 269 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05971 510 ProSiteProfiles ACT domain profile. 137 212 IPR002912 -
Vivi4g05971 510 Gene3D Transferase(Phosphotransferase) domain 1 347 436 - -
Vivi4g05971 510 SUPERFAMILY ACT-like 133 203 IPR045865 -
Vivi4g05971 510 ProSiteProfiles Protein kinase domain profile. 269 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05971 510 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 153 494 - -
Vivi4g05971 510 Pfam Protein kinase domain 272 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05971 510 SUPERFAMILY Protein kinase-like (PK-like) 251 491 IPR011009 -
Vivi4g05971 510 Gene3D Transferase(Phosphotransferase) domain 1 437 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05971 Vivi-Chr4 196993524 197001099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05971 5 507 MAP Kinase Kinase Kinase AT4G35780 46.329 3.31e-163 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi4g05971 Pkinase 2.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05971 - - gmx:100818047 572.007