Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05956 ATGTTGGATGCAGTTCTTCTTGCGCTATTCTTGCCGTGTCTCGGCATGAGCGCCATCTTCATAGTCTACATCTGTCTTCTCTGGTACGCTACTACTCACCCAACTACCGGAATCATTATCAAACCGGTCACCAACACCGGTCTTTCCCCTTCTGAACTCCAGAAGCTACCTACTATCACCGGTAAAGATCTTGTTGTTGGTCCAGAATGCGCCGTTTGTCTCGACGACATAAGCGAGGAACAATCCGCACGTGTGATTCCAGGTTGTAATCATGCTTTTCATTTGGAATGTGCTGACACGTGGCTTTCCAAACATCCTCTGTGTCCTGTTTGTAGAGCCAAACTCGATCCTAAACTCTTTACCGATTCTTCTCAAAATCCTTGTTAA 387 0.4625 MLDAVLLALFLPCLGMSAIFIVYICLLWYATTHPTTGIIIKPVTNTGLSPSELQKLPTITGKDLVVGPECAVCLDDISEEQSARVIPGCNHAFHLECADTWLSKHPLCPVCRAKLDPKLFTDSSQNPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05956 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 118 IPR013083 -
Vivi4g05956 128 SUPERFAMILY RING/U-box 60 118 - -
Vivi4g05956 128 SMART ring_2 70 111 IPR001841 -
Vivi4g05956 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 118 - -
Vivi4g05956 128 Pfam Ring finger domain 69 112 IPR001841 -
Vivi4g05956 128 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05956 Vivi-Chr4 196774311 196775070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05956 1 128 C3H Transcription Factor Family AT5G42200 50.000 9.41e-43 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05956 K19037 - gmx:100817919 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05956 4 196774311 196775070 Vivi4g05956 4 196774311 196775070 ECH
Vivi4g05956 4 196774311 196775070 Vivi4g05956 4 196774311 196775070 PCT