Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05954 ATGACTCAAGACGAAGAGATGAAAGATCACCCAACACCTTCTCACTCCATTTCAACAGCTATTCCTTCCACATTGCATCATTTGAAGGAAATAGCATCAATCATTGAAACTGGTTCGAACTCTAAGGAAGTTCGCAGAATTTCTCGTGCGGTGCGCCTTACAATTGCTTTGAGGTCCAAACTCACTGCTCCGGTTCTCTCATCGTTCATCGATCACGTTCTTCCTACTGCTTCTGACTCTCATTCTAGGTTAACTTCTTATCTTCCCAAGGATGATGATCATGAGATGGAAGTGGATTCTGCAACATCTGCCGCTATTCAAACCCCAGCCAAACACTTGTTGCCTGAGCTAGAAATCTACTGTTACTTCCTTGTGCTTCTTTTTCTTATTGATCAGAAACGATATGAAGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGATCGGCTCAAGAACTTGAATAGGAGAACTGTAGATGTTATAGCCTCAAGACTCTACTTTTATTACTCGTATAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGTGGAAACCTCTTTCAGTTGCACAGGATTGCTACCCTGCGCCATGATGAACTTGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTCCACTACAACCTATATGATCAGGCAGAGAAGCTGAGGTCTAAGGCTCCACGATTTGAGGCTCATTCAAACCAGCAGTTCTGTCGCTATCTCTTCTACCTTGGGAAAATTCGGACCATTCAGTTGGAATATACCGATGCAAAAGAATCTCTCCTGCAGGCTGCTCGTAAAGCACCAGTTGCAGCACAAGGTTTTCGAATTCAGTGTAACAAGTGGGCCATTATAGTTCGTTTACTGTTGGGAGAAATTCCAGAGAGAACTATCTTTGTTCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACTAATGCTGTCAGGATTGGTGATTTAGAGCTGTTTAGAAATGTTGCAGACAAGTATGCTACCACTTTCAAGACAGATGGAACCAATAATTTGATTGTTCGATTGCGTCACAATGTCATTAGGACTGGTTTGCGCAACATCAGTATATCATATTCTCGCATCTCGCTGGCTGATGTAGCTCAGAAGTTGAGGTTGACCTCTGCAGATCCCATTGCTGATGCGGAAAGCATTATATCAAAGGCTATCCGTGATGGAGCAATTGATGCGACATTGGATCATGCTAATAAATGGATGTTGTCCAAGGAAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAGGCCGTTCAAGCACTGCGTTTTCCAAAAAACACACATAAGGAAAAGGAAATAGCCGAGAAGCGCAGAGAAAGGCAGCAACAAGAGCAAGAACTGGCAAAGCATATTGAAGAGGAAGATGATGACGACGACTTCTGA 1470 0.4272 MTQDEEMKDHPTPSHSISTAIPSTLHHLKEIASIIETGSNSKEVRRISRAVRLTIALRSKLTAPVLSSFIDHVLPTASDSHSRLTSYLPKDDDHEMEVDSATSAAIQTPAKHLLPELEIYCYFLVLLFLIDQKRYEEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVADKYATTFKTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLTSADPIADAESIISKAIRDGAIDATLDHANKWMLSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEEDDDDDF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05954 489 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 346 439 IPR000717 -
Vivi4g05954 489 Gene3D - 243 450 - -
Vivi4g05954 489 FunFam 26S proteasome non-ATPase regulatory subunit 3 121 444 - -
Vivi4g05954 489 SUPERFAMILY "Winged helix" DNA-binding domain 349 421 IPR036390 -
Vivi4g05954 489 Coils Coil 455 483 - -
Vivi4g05954 489 SMART PCI/PINT associated module 175 346 - -
Vivi4g05954 489 MobiDBLite consensus disorder prediction 452 478 - -
Vivi4g05954 489 MobiDBLite consensus disorder prediction 1 21 - -
Vivi4g05954 489 ProSiteProfiles PCI domain profile. 240 421 IPR000717 -
Vivi4g05954 489 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 15 484 - -
Vivi4g05954 489 Pfam Proteasome regulatory subunit C-terminal 421 487 IPR013586 GO:0000502|GO:0030234|GO:0042176
Vivi4g05954 489 Pfam PCI domain 312 416 IPR000717 -
Vivi4g05954 489 MobiDBLite consensus disorder prediction 452 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05954 Vivi-Chr4 196744403 196748566 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05954 K03033 - qsa:O6P43_016308 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05954 4 196744403 196748566 Vivi4g05954 4 196744403 196748566 ECH
Vivi4g05954 4 196744403 196748566 Vivi3g00647 3 10910488 10914458 PCT