Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05948 ATGGCTCAAACAACACCTAATCACACACAAACTGTTTCTGGTTGGACAGCTCATGATTCTTCCGGCAAGATTACCCCATACACCTTCAAAAGAAGAGAGAATGGTGTTACTGATGTAACTATCAAGATTTTGTATTGTGGAATTTGTCACACTGACATCCATTATGCTAAAGATGATTGGGGCATTACTATGTACCCCATTGTTCCCGGGCATGAGATAACAGGGGTTATCACTAAGGTTGGGAGTGATGTATCAGGATTCAAAGAAGGAGAGAGAGTTGGTGTGGGGTGTTTGGCTGCTTCATGTTTAGATTGTGAGTTTTGCAAAACAGATCAAGAAAATTACTGTGAAAAGTTGCAGTTTGTTTACAATGGAATTTTCTGGGATGGTAGCATTACCTATGGTGGCTACTCACAAATGTTGGTGGTAGATTTCAGATATGTAGTGCACATTCCAGAGAGCTTACCAATGGATGCAGCAGCACCGTTGCTGTGTGCTGGAATAACAGTGTTCTGTCCTTTGAAAGACCACAATTTGGTATCAACACCTGGGAAAAGAATTGGTGTGGTTGGTTTGGGAGGACTTGGTCACATGGCTGTTAAGTTTGGTAAAGCTTTTGGTCACCATGTTACTGTCATAAGTACTTCTCCTTCCAAAGAAGCTGATGCTAAGGAACGTTTGGGAGCTGATGATTTCATAATCAGCACTAATCCTGAACAATTGCAGGCTGCAAAGAGAAGTTTAGATTTCATTCTGGACACTGCATCAACGGATCATGCTTTACTGCCTATCTTAGACTTGCTCAAAGTAACAGGAACCCTATTTCTCGTGGGTGTAGCCGACAAGCCACTACAATTGCCTGCTTTTCCATTGATACTTGGGAAGAGATCAATAAAAGGTGGGATCATTGGAGGAATAAAAGAGACACAAGAAATGTTGGACGTTTGTGGAAAACTGAATATCACATGTGACATTGAGTTAATCAAAACTGATACAATCAATGAGGCTTTTGCTCGTCTTGTGAAGAAAGATGTTCGTTACCGTTTTGTCATTGACATTGCCGACGCTTTTGCTACTACCAAAGATGTTTAA 1092 0.4103 MAQTTPNHTQTVSGWTAHDSSGKITPYTFKRRENGVTDVTIKILYCGICHTDIHYAKDDWGITMYPIVPGHEITGVITKVGSDVSGFKEGERVGVGCLAASCLDCEFCKTDQENYCEKLQFVYNGIFWDGSITYGGYSQMLVVDFRYVVHIPESLPMDAAAPLLCAGITVFCPLKDHNLVSTPGKRIGVVGLGGLGHMAVKFGKAFGHHVTVISTSPSKEADAKERLGADDFIISTNPEQLQAAKRSLDFILDTASTDHALLPILDLLKVTGTLFLVGVADKPLQLPAFPLILGKRSIKGGIIGGIKETQEMLDVCGKLNITCDIELIKTDTINEAFARLVKKDVRYRFVIDIADAFATTKDV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05948 363 Gene3D - 15 353 - -
Vivi4g05948 363 SUPERFAMILY GroES-like 18 180 IPR011032 -
Vivi4g05948 363 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Vivi4g05948 363 Gene3D - 166 323 - -
Vivi4g05948 363 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Vivi4g05948 363 CDD CAD1 14 352 IPR047109 GO:0016616
Vivi4g05948 363 FunFam probable cinnamyl alcohol dehydrogenase 15 172 - -
Vivi4g05948 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Vivi4g05948 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Vivi4g05948 363 FunFam Cinnamyl alcohol dehydrogenase 166 323 - -
Vivi4g05948 363 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Vivi4g05948 363 PANTHER ALDEHYDE REDUCTASE 7 354 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05948 Vivi-Chr4 196634557 196637074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05948 14 357 Monolignol Biosynthesis Gene Families AT2G21890 56.686 6.30e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05948 K00083 - gmx:100820588 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05948 4 196634557 196637074 Vivi4g05948 4 196634557 196637074 ECH