Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05945 ATGTTCATAACAAATGGTGCTTTCATTGAGAGAAAAGCCATGACTCCACCTTCTCCTTCCATGGAAGAACTCTCCGCCTCCCTCACTCAACTCATCCAAAGCCAACAATCATTTCAACTTAATTTTTCAGCAAGCATCAACAACCTCAAAACTGAATTCCATCATCTTCGATCACTTATTCCTCCACCAAATTTCAATTCACCCATCACACCTCATACTCAACAACAAACTACACCACAACCTCGTGAAATTTTCATTCATCAACCTTGTTCACCACTGGGTTTCACTTCACCCTTCACACCAGATCCATGGTTGTATTCACACACACCATTTCCTCAACATCAGCCGAAAAATAGTCCTTCCACCACCACTCATTTCCACCATACCCACTCATCATCTATTAACCACCAACACCACCTTGAGATTTACGATTCTGAAACTGTGGAGAAAGACCTAACAAAATCAACAAATCTTTACCAAACAGAACTGCAACAACCAACTCTAATTATGAAACAACAACCAACTCTAATTATGAAACAAGATGAAGAAAAAAAGTCAGTGGGAGAGGAATCACCACCTGAGCCACCACCGAGAATGATTTCTGATCAACCTCCAGTGTCGTCGCCGCCCTTAAAACCTCAGAACACAGTCTCACATCAATCACCGCCACCCCTGCGATCTCCAAATGTAGTCTCATCTATGTCACCACCGCCGAAAACACCATTGATACCTCCAAACACAGTCTCTTATCAGCCACCACTAGTGAAACACCCTTGGGTTGTTACTACGCGACCAATCTCTCTACCACGTTGGTTCACCGGCGCAAGGGAACTTGACAACCATGACTCTCAGGCCGAAGTGATGGAAATGCAGATTAAGGTCTTCGTATTTATTGCAACTGCAAACCCAGCATATCCTGCAGTGTTTGCATTTGGTGACTCAATCTTTGACACAGGAAATAATAACAACCTTGCAACTCTATCAAAATGCAACAATCCTCCCTATGGAAGAGATTTCTATGGCGGTCAACCTACCGGAAGATTCGGGAACGGTCGAGTTCTATCGGATTTGATAACTGCCTCTTTGGGAGTGAAAGATACATTACCAGCATTCCTTAACCCGGCTTTATCTGATAAAGATCTTCCTACTGGGGTTTGCTTTGCATCCGGAGGTTCCGGGTTTGATGATTTGACAGCAAACTCACAGGGAGGAGTTTTGACAATGGGAGCTCAACTGAACTTTTTCAAACAATACATAGCAAAGTTGAAAGCTGCAGTTGGACCAAAAAAAGCTTCTGAAATCATATCCAAAGCTTTGTTTATAATATCAGCAGGAAACAATGATGTTGCGATCGCTTATTCTTTCACTATTCGAAGAACTATGCATTTCAATGTATATGCTAGTACTTTAGTTACAGCAGGCCAAAATTTCCTCAAGAGTTTATATCAACTGGGAGCACGACATGTGTGGGTTATGAGTACAATACCATTGGGATGCTTGCCTGCAGCTAGAACTCAACTGGGAGGACCATTAAGGTTATGTGTAGATTATGAGAATGGATTAGCACAAAGGTATAACGGCATGTTATCGGCCGGAGTTTCGAGTCTTAAAGCCTCTCTTCCCGATTACGATCTTAAGTTCGTCGATGTCTATACTCCTATGCTAAATATCATACAGAATCCTTTCGCATCAGGGTTTCAAAATGTGTGGAATGGTTGCTGTGGAACTGGAACATTTGAAATGGGGGCTCAATGCAACTTGTTAACGTTCCAATGTCCAAATACTGCAACTTATTTTTTCTGGGATGTTGCTCATCCTACAGAGAGAGCTTATCAACTCACTGTTGCACAAATACTACAGGCTCAAAACTATGATCTTAATAGTTACCATATTTCCAAAGCTCTTCATCCTTTGAATGTATCAAGTCTTAGTTTCAAAAATTAA 1944 0.4167 MFITNGAFIERKAMTPPSPSMEELSASLTQLIQSQQSFQLNFSASINNLKTEFHHLRSLIPPPNFNSPITPHTQQQTTPQPREIFIHQPCSPLGFTSPFTPDPWLYSHTPFPQHQPKNSPSTTTHFHHTHSSSINHQHHLEIYDSETVEKDLTKSTNLYQTELQQPTLIMKQQPTLIMKQDEEKKSVGEESPPEPPPRMISDQPPVSSPPLKPQNTVSHQSPPPLRSPNVVSSMSPPPKTPLIPPNTVSYQPPLVKHPWVVTTRPISLPRWFTGARELDNHDSQAEVMEMQIKVFVFIATANPAYPAVFAFGDSIFDTGNNNNLATLSKCNNPPYGRDFYGGQPTGRFGNGRVLSDLITASLGVKDTLPAFLNPALSDKDLPTGVCFASGGSGFDDLTANSQGGVLTMGAQLNFFKQYIAKLKAAVGPKKASEIISKALFIISAGNNDVAIAYSFTIRRTMHFNVYASTLVTAGQNFLKSLYQLGARHVWVMSTIPLGCLPAARTQLGGPLRLCVDYENGLAQRYNGMLSAGVSSLKASLPDYDLKFVDVYTPMLNIIQNPFASGFQNVWNGCCGTGTFEMGAQCNLLTFQCPNTATYFFWDVAHPTERAYQLTVAQILQAQNYDLNSYHISKALHPLNVSSLSFKN 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05945 647 PANTHER GDSL ESTERASE/LIPASE EXL3 298 617 - -
Vivi4g05945 647 MobiDBLite consensus disorder prediction 212 228 - -
Vivi4g05945 647 MobiDBLite consensus disorder prediction 192 211 - -
Vivi4g05945 647 Gene3D SGNH hydrolase 296 624 IPR036514 -
Vivi4g05945 647 MobiDBLite consensus disorder prediction 111 130 - -
Vivi4g05945 647 SUPERFAMILY SGNH hydrolase 386 620 - -
Vivi4g05945 647 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 308 319 IPR008265 GO:0006629|GO:0016298
Vivi4g05945 647 MobiDBLite consensus disorder prediction 229 245 - -
Vivi4g05945 647 Pfam GDSL-like Lipase/Acylhydrolase 308 614 IPR001087 GO:0016788
Vivi4g05945 647 CDD SGNH_plant_lipase_like 306 621 IPR035669 -
Vivi4g05945 647 MobiDBLite consensus disorder prediction 181 245 - -
Vivi4g05945 647 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05945 Vivi-Chr4 196572920 196576826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05945 297 620 Pollen Coat Proteome AT1G75910 43.976 3.39e-79 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05945 - - vvo:131596689 1269.6