Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05938 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACCGATGGAAAGTTGTCTCCAACAGCAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTTTTCACCGAAAAATGCTTATTAGGCCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAGATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCGCGAAATCGATTTTATTTACAAGTTTTTCAGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCATTGGAATGGTGGATAGTATTGGTTATGCGCAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTACCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGAGCCTTTTATGTGTTGATGCTGATTTTCCGATCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAAGGTAACCCTGTCTGACCAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTCCAAAAATTATTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGCGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTTCTATCGTGCCTGCCATATGTGTCAATCTATAGCGCGCGGGGACAGCCCCCCCTTTGAGTGTGAATCTGGTCATGAAACCATGGCCGAAGTCCTTAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGCTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCAGGCTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCCGTCGTTATGATTATAAAAAATGATCCTATTATCCAGCAACTTAAGGAAAAATGGGGAACAGATGAGGAACCTATTCCAATCCAAACTGTCGTACCTGATACTCTGGAGATTAAAGAGAGTGTTGATGAAGCTAAAACAGATGCCAATGAAGACTGTGAATTGGTTACAGACCTGGAAATTACATCTGAACACAAGCCGGATGCTGTTACACCTGGTGGTAAGAGACATCTTCCTGCTGCATCAAGTGAATCTATTGATGGGGAACTGTCATCAAACAAGCTGAAGAAGATAATTAAAATGGAGAAGATTGATTAG 1572 0.4135 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNSKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHRYMIKFTAGTSVLDEDKHEIPAKSILFTSFSDIITGRFDKHVLIHVIGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVSLLCVDADFPIMKDFIDRMPEESKVTLSDQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWFYRACHMCQSIARGDSPPFECESGHETMAEVLRYKIEIEVTHGGQSCNFVFWNRECEMLLGLSASQLRNTMIQAGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDPIIQQLKEKWGTDEEPIPIQTVVPDTLEIKESVDEAKTDANEDCELVTDLEITSEHKPDAVTPGGKRHLPAASSESIDGELSSNKLKKIIKMEKID 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05938 523 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi4g05938 523 MobiDBLite consensus disorder prediction 482 507 - -
Vivi4g05938 523 Gene3D - 255 433 IPR012340 -
Vivi4g05938 523 SUPERFAMILY Nucleic acid-binding proteins 294 411 IPR012340 -
Vivi4g05938 523 Gene3D - 110 249 IPR012340 -
Vivi4g05938 523 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi4g05938 523 CDD RPA1_DBD_A_like 19 103 - -
Vivi4g05938 523 Gene3D - 3 104 IPR012340 -
Vivi4g05938 523 CDD RPA1_DBD_B_like 137 241 - -
Vivi4g05938 523 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05938 Vivi-Chr4 196523774 196526426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05938 8 378 Core DNA Replication Machinery Family AT5G45400 20.885 3.09e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05938 - - vvo:131613993 864.374