Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05928 ATGACTCTCGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGTCTCACAGCGCCTTCTCGAGTGCAGGAGTTGATCTCTATTATGAAGAAGGATCAAGACAGTATTGTGAAAAACACTGGTGATGCAATGAGACAGTGGGCTTCTGTTGCAAGCACTATTGCTGCTACAGAGAGTAAAGACTGCCTTGACCTTTTTATTCAATTAGATGGACTATGGTTCATCAATAGATGGTTAAATGATGCTCAAAAAGTTGGCGCTGATACAAATGATGTCTTCATTGAAGAGTCAGTTACTGCAATGTTAGGAGCAGTTGAAAAGCTATATCTAGACAGCGGAAAGACAATTTCATCAGAAATTTGGGCCACTGCAAGTAACCTGCTTGTTCATCAGAGCTCTAAGATTCAAGATAGAGCAAGATTATTATTTGACAAGTGGAAAGGAGTGGGAAATGGAGATGCTGAATCTCATGATATGGATACTGGTCAAAGAAACCATGTGAGTGATAAGAATATCAAGGAGGAAGGTCAGTTGACTTCAGTGAACGGGGCTAGTAATGAGAATGACCATGTCTCGCGACTTGAAGAGGGTGAGAAGTCTATATTGAGAAGCTCGGATACTCAGGTAGCAGATAAGGTTGCTAGTGTACAGAAAGAGAGTTCAGACAGTGCACACCGATCCTCTGTAAGTTTGGATTGTGAAGATATCAAAGAGAGATCTAACCATCTTGCTACTGTTCAAGAAAATGCTCCCATAAGTGAAGGTGAGTTGACATCAGCTGGGATCTCTAACATACCTGTACTGAAACAAGGAGGTTTCAGAGAACAACCGGATGATTTACAGTTAAGTGACTTATCCATGAAGGAGAAGCAAGAGCTCAATGATAATGGCCCTCCAGAAAAATTAGGAGCACCAATAAATCCAACGCCCGAGCCTGTTTCTGTTGGCGCCATCGAAGCACCAGTTAAGCCTGTGCCTGCATCAATAAGTCCTGAATCTTCTTTAGAACGCAGTGCTAAAAACAATGAAGAGGGAATGTGTGATGGAGTAATAGTTCCTTGTATCATGAGAACACCTGCCTCTGATAGAATGAATGTGGTGGATGATGCCAGACCCACAAATTCTAGCAATACACAGCCATCCAAAGCGTCAGTAAAGGAAGAAAGCAAGAGCCAAGTTTCTAGTCAAGGTGAAGACATCTCAAACAGTGCTGATTCGTTTAAGCAAAGAAAAGATCCCACTAGCCCCAACCTTATTGACAAGAGTTCTGACATGGAAGTTGATAGAGAATATGCTAGAACTGTAAAGGAAGACGAGGTCCAAGTTTCTGATCAAGATGATGATACCTCAAATAGTTCTGGTTCCTCAAAACAGAGCAAAGGTTCCAGAAGCCCTAACACTGTTAACAAGAATTCTGAACTTGAACTTGATTATGGTATTGTTGATGCTTTACAAGTCGCTCGACAGGTTGCTCAGGAAATCGAAAGAGAAGTCAATGATGCTTCTTCAGAGAAAATCTCAGAAGCTGGCAGCCCAGATTCTACTGCCAAAGATGTTGACCTTGCTTGTGCCTTACCCGAGGAGGTGTCATCCAGACAAAGCAACTCTGCTGAAGCATGTCCTGAGGAGAAGCGTATGAGTATTTCAGATGATATCATGGTTGAGCCAGAATGCCTCCCTGACTTGGAGTCCTCGCAGTTGACTGAGGCAGCTCAAGATCCAGGAGGTAATTCAGAGAAAAGCCTTTGCACCTTTGATCTTAATGAAGAATATGGTTCTGATGATATGAATGTTTCTGCAAATACCATATCTGCAACACCAATACCTGTTGTCTCTGCTTCAAAACCTGCACAGACTTCAGTATTGCCAACAGCCCCTTTACAGTTTGAAGGAACACTTGGTTGGAAAGGGTCGGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATTCTGATAATCAGAAGAATGTTTCTGCTGGTGGGAACTCTGATATTTCCAAACAGAGGCATGCTTTTCTTGATTTTGATTTGAATGAGGCTGGGGGTGAAGAAGAATTAGTAAAACAAATTGGCGAATCTTCAGGCCTGCCTTCTGGGCAATCATCAGTGGAACATAGCCCTAAAAGATTTAAGAGGTTTGAACTAGATTTGAACAGTGCCGGTGATGATGGTGATGCCCAACCTTCAGATCAGAGGATGGAGGGGCAGCTCTTTTTCGGAAGAAACGGTTATTGGAGCCCATCACCTGCATCATCATCGTCGTCAATGCAGCCTTCAATTCGAAACATTGATTTGAATGATAGACCATACTTTCAAACTGATTTGGTGGACCAAGGGCCTACAAAATCTTCTTCAAGTATTGAAGCATATGGACTTTCCAAATCAGATGTCCCTGCAATATCTATAATGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAACATGTTCCTCAATTTTGGTCTTTGTCAAATGGCAAGGCTGTTGAGCCGGCAATAGATCTTACGATGATGCCAGGAGCAGCTGGAGTTTCAGGAATGGGCCCTGCAGTATCCTACAATCATTCATCTTTTCTGGGATACAACGGACTGACATCAATGCCCCCTCTGTCTTATTCGTCAGCCGGGTATGGTTCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGAGCTCCGGTTGTGCCTCAAGTTGGGGGATCTTCCTCAACCGTCCTGTCATCATACTCTCAGCCCCCATATATCATGAGTATGAACGGTACACAGCTTGGTCTAAATGGTGTTGGACCTTCCCGTCCCAACTTCGATCTTAACTCTGGCTTCTTGATCGATGGCGGGAATAGAGAAGCATTAGCTGCAAGGCCGTTTTTCTTTCCGGGTCAGAGCAGACCTATGGAGGATAGGACCCTTCAACAGTCCTCAAGTTCAGGGGTTGGTGGGAAAAGAAAAGAGCCAGATGGTAGCTGCTGGGAAACCTATCCGTTCGGCTACAAACATCAGCAACCACCGTGGAAGTAG 3018 0.4394 MTLEDFFTLTEMKDGLTAPSRVQELISIMKKDQDSIVKNTGDAMRQWASVASTIAATESKDCLDLFIQLDGLWFINRWLNDAQKVGADTNDVFIEESVTAMLGAVEKLYLDSGKTISSEIWATASNLLVHQSSKIQDRARLLFDKWKGVGNGDAESHDMDTGQRNHVSDKNIKEEGQLTSVNGASNENDHVSRLEEGEKSILRSSDTQVADKVASVQKESSDSAHRSSVSLDCEDIKERSNHLATVQENAPISEGELTSAGISNIPVLKQGGFREQPDDLQLSDLSMKEKQELNDNGPPEKLGAPINPTPEPVSVGAIEAPVKPVPASISPESSLERSAKNNEEGMCDGVIVPCIMRTPASDRMNVVDDARPTNSSNTQPSKASVKEESKSQVSSQGEDISNSADSFKQRKDPTSPNLIDKSSDMEVDREYARTVKEDEVQVSDQDDDTSNSSGSSKQSKGSRSPNTVNKNSELELDYGIVDALQVARQVAQEIEREVNDASSEKISEAGSPDSTAKDVDLACALPEEVSSRQSNSAEACPEEKRMSISDDIMVEPECLPDLESSQLTEAAQDPGGNSEKSLCTFDLNEEYGSDDMNVSANTISATPIPVVSASKPAQTSVLPTAPLQFEGTLGWKGSAATSAFRPASPRKNSDNQKNVSAGGNSDISKQRHAFLDFDLNEAGGEEELVKQIGESSGLPSGQSSVEHSPKRFKRFELDLNSAGDDGDAQPSDQRMEGQLFFGRNGYWSPSPASSSSSMQPSIRNIDLNDRPYFQTDLVDQGPTKSSSSIEAYGLSKSDVPAISIMGAKVEVGRREHVPQFWSLSNGKAVEPAIDLTMMPGAAGVSGMGPAVSYNHSSFLGYNGLTSMPPLSYSSAGYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSSYSQPPYIMSMNGTQLGLNGVGPSRPNFDLNSGFLIDGGNREALAARPFFFPGQSRPMEDRTLQQSSSSGVGGKRKEPDGSCWETYPFGYKHQQPPWK 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05928 1005 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1005 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 645 667 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 365 473 - -
Vivi4g05928 1005 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 151 IPR035441 -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 291 311 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 965 979 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 640 667 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 958 1005 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 492 517 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 368 413 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 446 473 - -
Vivi4g05928 1005 MobiDBLite consensus disorder prediction 414 440 - -
Vivi4g05928 1005 Coils Coil 484 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05928 Vivi-Chr4 196371554 196376816 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05928 - - lja:Lj5g3v0238160.2 1239.17