Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05923 ATGGCGATGGTGGAAGAGGAACCCAAGGCTCTGAACTATATTCCAGAGGTTATATTGAAGAAGAGGAAGCACAGTGAAGCATGGGCTTTGAGAAAAAAGGATCAATTCCAGAAGAAAAGTTTCCAGCTCAGAAAATCCAAGGACTTCATCAAAAAGCCTGAGGATTTCATCTTTGAGCATCGTAATAGAGAGATTGATCTCGTTAGGATGAAACGTAGGGTTAAGAGGAATCGTGGAGAGAAAACTGGCACAATCAATAAGCCCATAATTGTTATTCGTATACAAGGGAAACAAGATATGCATGCTACAACTAGGAAGCACTTGTTTGATTTGGGATTGAGAAGGATTTTCAGTGCTGTTTTTTTGAAGCCGACTGATGGAGTTATGGCTAAGCTGGCTAGAGTTGAACCATATGTTACCTATGGGTATCCAAATCTTAAAAGCATAAAGGAGCTAATTTACAAGAAGGGAAATGCAAAATTAGATAAGCGAAAAGTTCCTTTGACAGATAATAACCTTATTGAGCAGGAATTAGGAAAGTTCGGTGTTGTTTGCATAGAAGACATTGTGCATCAAATTGAGAATGTTGGTCCTCACTTTAAGGAAGTTGTCGGATTTATGTGGCCTTTTGAACTGAACAAGCCAGCAGATGGATTGAACGGATTGAAAAACCGATTCAAGCATGGTGGGGATTCAGGGGACCGTGAAGATCTCATCAACGAGCTCATCAATAAGATGAATTAA 744 0.3965 MAMVEEEPKALNYIPEVILKKRKHSEAWALRKKDQFQKKSFQLRKSKDFIKKPEDFIFEHRNREIDLVRMKRRVKRNRGEKTGTINKPIIVIRIQGKQDMHATTRKHLFDLGLRRIFSAVFLKPTDGVMAKLARVEPYVTYGYPNLKSIKELIYKKGNAKLDKRKVPLTDNNLIEQELGKFGVVCIEDIVHQIENVGPHFKEVVGFMWPFELNKPADGLNGLKNRFKHGGDSGDREDLINELINKMN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05923 247 SUPERFAMILY Ribosomal protein L30p/L7e 90 247 IPR036919 -
Vivi4g05923 247 FunFam 60S ribosomal protein L7 89 194 - -
Vivi4g05923 247 CDD Ribosomal_L7_archeal_euk 89 247 IPR035808 -
Vivi4g05923 247 Pfam Ribosomal protein L30p/L7e 90 139 IPR016082 -
Vivi4g05923 247 Gene3D - 192 247 IPR036919 -
Vivi4g05923 247 Gene3D - 89 191 IPR036919 -
Vivi4g05923 247 PANTHER 60S RIBOSOMAL PROTEIN L7 11 247 IPR039699 -
Vivi4g05923 247 Pfam Ribosomal L30 N-terminal domain 14 78 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05923 Vivi-Chr4 196213733 196216903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05923 3 247 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 50.607 6.63e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05923 K02937 - gmx:100306107 358.992