Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05913 ATGATCCGATTCATTCTTTTGCAGAACCGCCAGGGTAAAACCCGTTTAGCCAAATACTATGTTCCTCTCGAAGATTCCGAGAAACACAAGGTCGAATACGAGGTTCATCGTCTCGTTGTAAATAGAGATCCCAAATACACTAATTTCGTTGAGTTTCGTACACACAAGGTTATATACAGGAGATATGCTGGATTGTTTTTCTCACTTTGTGTTGATATTACCGATAATGAATTGGCCTATTTAGAGTGTATCCATTTGTTTGTTGAAATTTTGGATCACTTCTTCAGCAATGTCTGTGAACTTGATTTGGTTTTTAACTTCCACAAGGTATACCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAAAAGGCTATCATTGAAAGAATGGGAGAACTTGAAAAACTAGAGTGA 429 0.373 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05913 142 Gene3D - 1 142 - -
Vivi4g05913 142 Pfam Clathrin adaptor complex small chain 1 141 IPR022775 -
Vivi4g05913 142 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 140 IPR016635 GO:0015031
Vivi4g05913 142 SUPERFAMILY SNARE-like 1 136 IPR011012 -
Vivi4g05913 142 CDD AP2_sigma 1 141 IPR027156 GO:0016192|GO:0030122|GO:0035615|GO:0072583
Vivi4g05913 142 PIRSF AP_complex_sigma 1 142 IPR016635 GO:0015031
Vivi4g05913 142 FunFam AP complex subunit sigma 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05913 Vivi-Chr4 196060137 196062507 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05913 K11827 - mnt:21399120 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05913 4 196060137 196062507 Vivi4g05913 4 196060137 196062507 ECH