Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05909 ATGGCTCTCCTCACTATTCCTCCTGAACAATCCCACTCCAAAAAAACACTCTCAAAACAAAAACACAAAAATCAACAACAACAACAACAGAATCAAAAGCAAAAACAGAAACAGAAGCAGAAACAGAAACAAAAACAAAAACAAAAGCCACCATCTTCATGGGACCAAATCAAAAACATCCTAACTTGCAAACAGATCGAAGGCTCCACAGTCCACGATCCTTCAAAACCAAACAACAGTTACTCAAAATTAGGTTCATCTTGTAGCTCAATTTGTAGCTTCAGAGATGCCGTTCATGGAAACACTCGAGTTGTTCATAGGTCTGATAATTCATCACCAGAAAGTAGCATCTTAGGTCAAGAAACAAGTTTACTCAAAAGAAAACCTGTCACTACCACTGCCACTGCTTCTTCATCATCATCAAGAACTCGTTCTACATCATGTTCTGCGAAATCCAACGGTGGAAATAACTACACGTCATCATCTTCCAGAGGAATGCAGTTCAGAAAACTCTCTGGATGTTATGAATGTCACATGATCGTTGACCCTAGCAGGCTAGCGATTCCTAGGAGCACAGTGTGTGCTTGTGATCAATGCGGAGAGGTTTTCCCTAAGATTGAAAGCTTGGAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTGGGTCCGGAAGATTCGGGTCGGAACATAGTGGAAATAATATTCAAGTCAAGTTGGTTGAAGAGAGAGAGTCCTATGTGTAAGATCGAACGGATATTAAAAGTCCACAACACCCAACGAACAATCCAACGGTTCGAGGAGTGCCGAGACGCAGTAAAATCCCGTGCAACCGCCACCACCAAGAAAAACCCTCGCTGCGCCGCAGACGGCAACGAACTCCTTCGTTTCCACAGCACAACTTTATCCTGCGCACTAGGCGCACGTGGATCCTCCGCCTTGTGCACCGCCGTACCTGGCTGCGGAGTGTGCACGATCATCCGCCACGGTTTTCAAAACAAAGGAGGTGTGAAAACCAACGCTAGCAGTGGTAGGGCCCACGACAACTCCATTGGAAGGATCGGAGAAGATTCCAGAAGAGCGATGCTGGTGTGCCGTGTGATTGCCGGAAAAGTGAAGCGCGTGGCGGAGGAAGGTACGCCGCCGGTAACGGAGGAGGAAACGGTGTCGTTTGATTCTGTTGCGGGGGACGCGGGAATCTACTCGAATCTCGAGGATCTAACCGTTTTCAATCCAAGGGCTATCCTTCCTTGTTTCGTGGTAATCTACAAGGTGCTTAATGAATGTTGA 1290 0.4659 MALLTIPPEQSHSKKTLSKQKHKNQQQQQQNQKQKQKQKQKQKQKQKQKPPSSWDQIKNILTCKQIEGSTVHDPSKPNNSYSKLGSSCSSICSFRDAVHGNTRVVHRSDNSSPESSILGQETSLLKRKPVTTTATASSSSSRTRSTSCSAKSNGGNNYTSSSSRGMQFRKLSGCYECHMIVDPSRLAIPRSTVCACDQCGEVFPKIESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRESPMCKIERILKVHNTQRTIQRFEECRDAVKSRATATTKKNPRCAADGNELLRFHSTTLSCALGARGSSALCTAVPGCGVCTIIRHGFQNKGGVKTNASSGRAHDNSIGRIGEDSRRAMLVCRVIAGKVKRVAEEGTPPVTEEETVSFDSVAGDAGIYSNLEDLTVFNPRAILPCFVVIYKVLNEC 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05909 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 222 IPR013087 -
Vivi4g05909 429 MobiDBLite consensus disorder prediction 104 164 - -
Vivi4g05909 429 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Vivi4g05909 429 Gene3D - 218 425 - -
Vivi4g05909 429 Coils Coil 17 49 - -
Vivi4g05909 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 52 423 - -
Vivi4g05909 429 FunFam C2H2-like zinc finger protein 218 424 - -
Vivi4g05909 429 MobiDBLite consensus disorder prediction 1 57 - -
Vivi4g05909 429 SUPERFAMILY ADP-ribosylation 219 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05909 Vivi-Chr4 196009462 196012793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05909 1 426 C2H2 Transcription Factor Family AT1G75710 60.684 1.44e-175 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g05909 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05909 - - aprc:113874200 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05909 4 196009462 196012793 Vivi4g05909 4 196009462 196012793 ECH