Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05897 ATGTCTAATCTCATTGCAGTTTTTTTAACACTAATACTCCTATTTCTGTTCCTATTGTTATGTATAGGTGGATATGACACCCTGGAAGAACTATTGGAAGTGATCACTTGGGCTCAACTAGGAATCCATGATAAATCAGTGGGTTTATTGAACGTAGATGGTTTCTATAACTCTTTGCTGTCATTCATGGACAATGTTGTAGATGAAGGTTTCATAACACCAGCTGCCCGTCATATTATTGTGTCTGCCCAAACTGCACAAGACCTCATCTGCAAGCTTGAGGAATACGTCCCCAAGCACTGTGGTGTGGCCCCGAAGCAAAGTTGGGAGATTGACCAGCAATTTGGCTTACCAGGTTCATGCGCCAACCAAACGCTCGTTTTCGAGTAG 390 0.4282 MSNLIAVFLTLILLFLFLLLCIGGYDTLEELLEVITWAQLGIHDKSVGLLNVDGFYNSLLSFMDNVVDEGFITPAARHIIVSAQTAQDLICKLEEYVPKHCGVAPKQSWEIDQQFGLPGSCANQTLVFE 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05897 129 Pfam Possible lysine decarboxylase 20 92 IPR031100 -
Vivi4g05897 129 SUPERFAMILY MCP/YpsA-like 22 96 - -
Vivi4g05897 129 Gene3D - 11 111 - -
Vivi4g05897 129 PANTHER LOG FAMILY PROTEIN YJL055W 23 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05897 Vivi-Chr4 195883003 195884942 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05897 K22522 - gmx:100814612 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05897 4 195883003 195884942 Vivi4g05897 4 195883003 195884942 ECH
Vivi4g05897 4 195883003 195884942 Vivi3g00583 3 9748293 9751255 PCT