Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05896 ATGGGAGTCCCAGCATTCTACAGATGGCTTGCAGAGAAGTATCCGATGGTGATTGTCGACTCCGTCGAGGAACAAGCGGTTGTTATCGAGGGCGTTCAAATCCCAATCGATACCAGTAAGCCAAACCCTAACGACATCGAATATGACAATCTTTATCTTGATATGAACGGTATCATTCATCCTTGTTTTCATCCTGAGGATAGGCCATCTCCGACTTCATTCGAGGAGGTGTTTGAGTGTATGTTTGATTACATTGATAGGCTGTTTAACATGGTGCGGCCAAGGAAGTTGCTCTTTATGGCTATTGACGGTGTTGCGCCGAGGGCTAAAATGAACCAGCAAAGGTCTAGGCGGTTTAGGTCGGCTAAAGACTCATCTGATGCGGCTGCTGAAGAAGCAAGGTTGAGGGAGGAATTTGAGAGGGAGGGAAGAAAACTTCCTCCTAAAGAAGAGTCACAGACTTTCGATTCAAATGTAATCACGCCTGGAACCGAATTCATGGCTGTTTTGTCAATTGCACTTCAGTACTATATTCATCTTAGGCTGAACAACGATCCTGGTTGGACAAATATCAAGGTTATTCTCTCTGATGCAAATGTTCCGGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTTCAAAGAAATCTTGAAGGATATGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTAGGTTTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTTGTGTGTGGTCAGATGGGTCATATGGCGGCAGATTGTCAAGGAAAGGCTAAAAGGAAGTCGGGAGAATTTGATGAGAAAGGAGATGCTATCGTTGCTAAAAAGCCCTTCCAGTTTCTGAACATTTGGACTTTGAGGGAATATCTGGAGTATGAAATGAAAATACCTAATGCTCCTTTTGAGATTGATTTTGAATGCATATTGGATGATTTTATCTTCATTTGCTTTTTTGTTGGAAATGATTTCCTACCACATATGCCTACGCTAGAGATTCGCGAGGGTGCAATTAACTTGCTGATGGCCGTATACAGGAAGGAATTTAGGGAAATGGGTGGTTATTTGACAAATGGTAGTAAGCCAAATTTAAGCAGAGTGGAGCATTTTATTCAGGCTGTTGGATCATATGAAGATAGCATATTCCTGAAAAGAGCACGATTGCAACAGCGACAAGTTGAAAGAATAAAGCGTCAGAAGTCACAAGCAAGAAGAGGCGACGATGCTGGGCCTCAAGTTCAACCCGAGTCTCTAGTTGCCGTTTCACAATTCCACGGTTCTCGTCTTGCTTCAGCTCCAACGCCTTCACCGTTTCAACAATCTGGGCCCACTTCAGTTAGTAAAGGCAATAAAGAAGTCTTTGAAAGGCCCAGTAAAGTGTCTAGGTCATCTTCAGGAGCAACTGTTGCTGCTGCAATTGTTGAAGCTGAGAACAGTCTGGAAATGGATGCTCAAGATAATAAAGACGACTTGAAGATAAAGCTGAAGGGGATACTTCGTGACAAAAATGATGTGTTCAACTCAAAAGATGGTAACGAGGACAAGATTAAATTGGGAGAACCTGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTCAAACTCCGGAGGAACTTGATGCCATACGGAAAGATGTTGTCTTGAAATACACGGAAGGTCTATGTTGGGTGATGCATTATTATTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCTTTTGCGTCTGATCTCAAGGACCTTGGTGGGCTTAATATTAACTTTGAGTTGGGTACTCCATTCAAACCATTTGATCAGCTTCTTGGAGTTTTTCCTGCTGCAAGCTCTCATGCTCTCCCTGAGCCGTATAGGAAACTTATGACTGATCCAAATTCGCCAATTATTGACTTTTATCCAATAGATTTTGAAGTGGACATGAATGGCAAACGCTTTGCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGTGCGACTTCTTCAGGAAGTTCGGAAAGTAGAGAACTTGTTAACGCCAGAGGAAAAGCGACGGAATGCAATAATGTTCGAGATGCTTTTTGTGAATTTGTGTCATCCTCTCTCTGCGTGCATTAGTACACTCGACAGCAAATGTAGAAACATGTCCAACACTGAACGTGCTGATGTCAAGGAAAAAATAGATCCCAATGAAAGTGGTGGAATGAATGGTTACATATCCTTATGTAGTGGAGAACCTTGCCCTCCCATATTCAGGTCCCCTATTGCAGGCATGGAAGACATCATGGATAATCATGTCATATGTGCAATCTTTAGACTTCCAGATGTGCATGAACATATAACTCGACCACCACCTGGAGTAAAATTTCCAAAGAAGATTGTGACGCTTGGGGATATACAACTTGAAGCTGTTCCATGGCATGAAGATAATGGTAGGAGATATAACGAAAATGGAAGGAAAAATCCATATGAAAATAATGGTAGTAAGAGATATAACGAAAGTAGAAGAAATAATCCACCGGGAACCATTTCTGGTGGGAGGCTTGGAGAGGCAGCACACAGACTCGTTGCCAATTCCATACAGGTCAGCTCGGATGCAAATAGATACCATCATCCTAATGGATCAACCATGCCTTTTAATGGACCAAGGGGTTATAGGCATTCACACCCTAGCAATAATTATGAATCGCGCCCTGGCCATAACTATGAATCACGCCCTGGCTATAATTACGAGTCACGCCCCGGCTATGCTGCTGCACTTCAACCGCCTTTATTAGCTCCTCCACAGTATGTACCTTATGCTGCCCCTACCGTGCAGTATGGTTATAACCAACCATACACTCCACCGGTGATTCACAGTCCTCATCAACATCAATCAAATTCCTTTCCTAGAGGGGACCATCAAAACCCTAGATCCCATCATTATGAAAGAAATAACCACCATCTTAATGGCGGAAATGCAAGGCATTCTACAGGCAATAATCAGAATCCTCGCTTTACAAATACACAAGGTTCATATCCCCGTCAAAGTCATCACGATTCTGGTCGCCACAGCCAAAACTTCCAACCATATAGAAGAGGTTCTGACCAGCATTGGACTCCACGGGGTAACCCTAGTGGGGATAGAGATTATGGTCAACATTCAGCCAATCATTACTCTCTATTAGATAGAGGAGCAGGCAAGAACAATCGCGGCAAATAA 3261 0.4269 MGVPAFYRWLAEKYPMVIVDSVEEQAVVIEGVQIPIDTSKPNPNDIEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRSAKDSSDAAAEEARLREEFEREGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWTNIKVILSDANVPGEGEHKIMSYIRLQRNLEGYDPNTRHCLYGLDADLIMLGLATHEIHFSILREVVFTPGQDKCFVCGQMGHMAADCQGKAKRKSGEFDEKGDAIVAKKPFQFLNIWTLREYLEYEMKIPNAPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYRKEFREMGGYLTNGSKPNLSRVEHFIQAVGSYEDSIFLKRARLQQRQVERIKRQKSQARRGDDAGPQVQPESLVAVSQFHGSRLASAPTPSPFQQSGPTSVSKGNKEVFERPSKVSRSSSGATVAAAIVEAENSLEMDAQDNKDDLKIKLKGILRDKNDVFNSKDGNEDKIKLGEPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGGLNINFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEVRLLQEVRKVENLLTPEEKRRNAIMFEMLFVNLCHPLSACISTLDSKCRNMSNTERADVKEKIDPNESGGMNGYISLCSGEPCPPIFRSPIAGMEDIMDNHVICAIFRLPDVHEHITRPPPGVKFPKKIVTLGDIQLEAVPWHEDNGRRYNENGRKNPYENNGSKRYNESRRNNPPGTISGGRLGEAAHRLVANSIQVSSDANRYHHPNGSTMPFNGPRGYRHSHPSNNYESRPGHNYESRPGYNYESRPGYAAALQPPLLAPPQYVPYAAPTVQYGYNQPYTPPVIHSPHQHQSNSFPRGDHQNPRSHHYERNNHHLNGGNARHSTGNNQNPRFTNTQGSYPRQSHHDSGRHSQNFQPYRRGSDQHWTPRGNPSGDRDYGQHSANHYSLLDRGAGKNNRGK 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 113 156 - -
Vivi4g05896 1086 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 1004 1029 - -
Vivi4g05896 1086 PIRSF Exonuclease_Xrn2 1 1073 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 117 151 - -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 840 861 - -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 987 1003 - -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 884 928 - -
Vivi4g05896 1086 FunFam 5'-3' exoribonuclease 149 372 - -
Vivi4g05896 1086 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Vivi4g05896 1086 Gene3D - 1 134 - -
Vivi4g05896 1086 Gene3D - 146 382 - -
Vivi4g05896 1086 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 965 1086 - -
Vivi4g05896 1086 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Vivi4g05896 1086 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 449 469 - -
Vivi4g05896 1086 Gene3D - 611 708 - -
Vivi4g05896 1086 FunFam 5'-3' exoribonuclease 608 708 - -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 449 488 - -
Vivi4g05896 1086 CDD PIN_XRN1-2-like 51 312 - -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 965 986 - -
Vivi4g05896 1086 Pfam Xrn1 helical domain 325 819 IPR041412 -
Vivi4g05896 1086 FunFam 5'-3' exoribonuclease 1 136 - -
Vivi4g05896 1086 PANTHER 5'->3' EXORIBONUCLEASE 1 1032 IPR027073 -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 415 435 - -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 830 867 - -
Vivi4g05896 1086 MobiDBLite consensus disorder prediction 1040 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05896 Vivi-Chr4 195864740 195874764 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05896 K12619 - gmx:100785683 1652.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05896 4 195864740 195874764 Vivi4g05896 4 195864740 195874764 ECH