Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05892 ATGTCTGCAAAATGCAGTAAAATCCGCCACATTGTACGCCTCCGCCAGATGCTACGCCGCTGGCGAAACAAAGCACGCATGTCATCCGCCAACCGTGCACCGTCGGATGTACCCGCGGGACACGTGGCAGTCTGCGTCGGAACTAACTACACCAGATTCATCATGCGCGCGACGTACCTGAACCACCCCATTTTCCAGAAGCTTCTCGTTCAAGCCGAAGAAGAATACGGTTTCTCAAACCACGGTCCTCTCACCATCCCCTGCGATGAAGAATTCTTCGAAGAAGCTCTCCGGTTCATTTCCCGGTCCAACAACGGATCGAACCGGTTCGTTAATCTCGAGTTTGAAGATTTTCAAAGACGCTGCCACGTCGGAATTAGAACTAACGTCGATTTTTGGCCTGAATCTCGACCGCTCCTTCATGGTCTCAGTGACAAAAATATTTGGTAG 450 0.5111 MSAKCSKIRHIVRLRQMLRRWRNKARMSSANRAPSDVPAGHVAVCVGTNYTRFIMRATYLNHPIFQKLLVQAEEEYGFSNHGPLTIPCDEEFFEEALRFISRSNNGSNRFVNLEFEDFQRRCHVGIRTNVDFWPESRPLLHGLSDKNIW 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05892 149 Pfam Auxin responsive protein 13 99 IPR003676 GO:0009733
Vivi4g05892 149 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 97 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05892 Vivi-Chr4 195784260 195785504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05892 3 148 Calmodulin-binding Proteins AT4G34750 49.342 1.30e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05892 K14488 - cave:132190292 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05892 4 195784260 195785504 Vivi4g05892 4 195784260 195785504 ECH
Vivi4g05892 4 195784260 195785504 Vivi4g05892 4 195784260 195785504 PCT