Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05884 ATGGATAACAAGCTTGACACAGCGGAGAAGAAGGTGCTGGTTGATATTGTAAAATTGGTACAAAAAAGAGGCATGAAGGGTAAACTTGGAGGCTGGAAGGAATTCTTGAACGTTCATGATAAGAAATTTGGGGCAGGTAAGAGTGATCCATCCAAGAGGTCCCATGAGGATTTGGCTGAATTTCTAAAGACATTCTCAAGTGATGAGGATTTAAAGTATTTTGATAACATCTTGCGGCATCATTCAAATCAATACACGGTAGAGCGACTGAAAGATAGATCTCATGATTCCCCAGAGCAGAGTTTAGTCCAAGCAACTATTCAGCACCCGAGGTACCCAATGGATTACTCATTCCCATCTATTGACGAGGGATGGTTAGTGATAACCCTTAAAAAAAAGGCCAAGGGGATAAAATCTACTACAATGCTTGCTGTTGATTGTGAAATGGTTCTTTGCGAAGATGGAACTGAAGCTTTAGTCAAAGTTTGTGTTGTAGATCACAATTTAGAGGTCAAACTACACGAACTTGTTAAACCGGAGAAAGCAATCACAGACTACAGAACAGAGATTACCGGTGTCTCTTCTAAAGATCTAGAGACAGTGACTCGCTCCTTAGCTGATATACAAAAATCGTTGAAGAAGCTGTTATACAGTGGAGCCATATTAGTGGGACACAGTTTAAATAATGATCTAGGTGTGCTGAAGCTAGATTATCCTAGAGTGGTTGACACTGCATACATCTTCCAACCCATGGATGGATCTACTTACAGGAGTCCTTCTTTAAATAGTTTGTGTCAGGCTGTGTTAGGCCACGGAGTTCGGAAAAAGGGTGCTACACATAATTGTCAAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTAACATTGGTTCAAGAGCCTGTTCCAGAAAGTGAGATGTCGAAGCTGCTTATTCACAGAATACCAACCACTGTGAACAGTGAAACACTACACAAAATTGTTCCTGGAGACTTCACAATAGAACTAAAGCCTACCAGGAATGGTCAAGTAGACAAGTATTCTGCCTTAGCTATCTTTAAGAACCCAAGAGAGGCACGTGAGGCATATGAAAATGTCCAAGGCAGCCAAGAAAAGGATTCAAATGGGCGTCTACAGAAACTTGTAAAATGTCCGGGTACAAATGCCGGTGTATATGTTCGGACAATGGGAGTTGATGATAACCGCAAAAAGAGAGATTTACAAGAGGATGAGACACTTGACACATCCAAGAACAAGAAAATAAAAATGGATCCTGAAGTTGAAAAGGATGATGCCCTGAAACCTTTACAAGTGAAACATGAACTTGAAAAGAAGGCCCATTTGAAACAGATTGAAGCACTGAAACAACGTTTAAAAGAAAGTGAATCGGAGCACTTGAAGGAGATTGACGCATTGAATAAACGGTTGAAAGAAAGTGAATTGGAGATTGAATCAATGAAGGAACAATTGGTGAGTCAACGATCAAAGGAAAGTGAGTTGGAGATTGAATCAATGAAGGAGCAGTTGAGGAAAAAGGACTTTGAAATCAACACTCTGCATAAAATGATAGATAACATTAGAAAAAAGCCAAAACCACCAAGACAATCTATTAAGGAACAAATGGATGATACATGTTAA 1674 0.3961 MDNKLDTAEKKVLVDIVKLVQKRGMKGKLGGWKEFLNVHDKKFGAGKSDPSKRSHEDLAEFLKTFSSDEDLKYFDNILRHHSNQYTVERLKDRSHDSPEQSLVQATIQHPRYPMDYSFPSIDEGWLVITLKKKAKGIKSTTMLAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHELVKPEKAITDYRTEITGVSSKDLETVTRSLADIQKSLKKLLYSGAILVGHSLNNDLGVLKLDYPRVVDTAYIFQPMDGSTYRSPSLNSLCQAVLGHGVRKKGATHNCQDDACATMKLVLAKIKHGVDKPFPLTLVQEPVPESEMSKLLIHRIPTTVNSETLHKIVPGDFTIELKPTRNGQVDKYSALAIFKNPREAREAYENVQGSQEKDSNGRLQKLVKCPGTNAGVYVRTMGVDDNRKKRDLQEDETLDTSKNKKIKMDPEVEKDDALKPLQVKHELEKKAHLKQIEALKQRLKESESEHLKEIDALNKRLKESELEIESMKEQLVSQRSKESELEIESMKEQLRKKDFEINTLHKMIDNIRKKPKPPRQSIKEQMDDTC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05884 557 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 311 IPR047021 GO:0004527
Vivi4g05884 557 Gene3D - 137 304 IPR036397 GO:0003676
Vivi4g05884 557 FunFam Small RNA degrading nuclease 3 137 311 - -
Vivi4g05884 557 CDD REX1_like 143 294 IPR034922 -
Vivi4g05884 557 Coils Coil 449 515 - -
Vivi4g05884 557 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Vivi4g05884 557 MobiDBLite consensus disorder prediction 534 557 - -
Vivi4g05884 557 SMART exoiiiendus 141 302 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05884 Vivi-Chr4 195615936 195621372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05884 118 308 C2H2 Transcription Factor Family AT3G27970 30.317 6.97e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05884 K14570 - gmx:100785565 655.981