Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05877 ATGGATGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACAACATCAGCACCAGCATCCTTCCATGAAGCAGATTATGGCAATCATGGCTGAACGAGATGCTGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATAGCATTCCTGCAGCGGGATAATGCAATTGCGGAAAGAAATAATGCACTTATGGAAAGAGACAATGCAATAGCAACCCTTCAGTTTCGAGAAAACACTTTGGCTAATGGCGGTATGTCATCATGCCCGCCAGGATGTCAAATTTCACGGGGCGTTAAGCATATACATCATCTGCCGCAACAGGTAAACCATTTGCCTACTATGGGGGATTCTTCTTACGGCACACGTGAATTGCCCACATCCAATGCCCTCCCAGAATCACCTATTCCTTCAGAGGTTGGGAAACCAGCTAGGCGGGCCAAACGACCAAAGGAAAGTAAGTCTGTTTCACCCAACAAGAAGACTCCAAAAACTTCTAGAAAGGTCAAGAAGGAGGGTGAAGATTTAAACAAGACAATGTTTGCCAATGACAAAGCACATGAATGGAAGAGTAGTCAGGAAATTATAAACGAAAGTGATGATCTTAACAAGCAGTTAGCGGTCTCAAAGGCTGATTGGAAACCCCAGGACTTGGCACTGAATCAAGTAGCATACGATGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACCGGCGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTGTATCCACTTCCAGCAGTGCCCAATAAAAGGCATGCACGAGTAGGCGGTAGGAAAATGAGTGGAAGTGCTTTTAATAAACTGCTTAGCCGGCTTGCAGCTGAAGGACATGATCTCTCACACCCAGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATATATCACAATAAAGTAG 1026 0.4513 MDDRENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDIAFLQRDNAIAERNNALMERDNAIATLQFRENTLANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPTMGDSSYGTRELPTSNALPESPIPSEVGKPARRAKRPKESKSVSPNKKTPKTSRKVKKEGEDLNKTMFANDKAHEWKSSQEIINESDDLNKQLAVSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05877 341 Pfam GAGA binding protein-like family 1 341 IPR010409 -
Vivi4g05877 341 MobiDBLite consensus disorder prediction 129 152 - -
Vivi4g05877 341 Coils Coil 52 86 - -
Vivi4g05877 341 MobiDBLite consensus disorder prediction 160 176 - -
Vivi4g05877 341 MobiDBLite consensus disorder prediction 1 32 - -
Vivi4g05877 341 MobiDBLite consensus disorder prediction 17 32 - -
Vivi4g05877 341 SMART GAGA_bind_2 1 341 IPR010409 -
Vivi4g05877 341 MobiDBLite consensus disorder prediction 128 193 - -
Vivi4g05877 341 PANTHER - 1 341 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05877 Vivi-Chr4 195501122 195504445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05877 66 341 BBR or BPC Transcription factor family AT5G42520 62.329 6.81e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vivi4g05877 GAGA_bind 1.1e-103 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05877 4 195501122 195504445 Vivi4g05877 4 195501122 195504445 ECH