Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05874 ATGGTGTCCGGATCGGGAGCCTGCGCAAAGAGAGTCGTGGTTGACGCCCGTCACCACATGCTCGGCCGTCTTGCCTCAATCGTCGCCAAGGAGCTTCTCAATGGTCAGAAGGTCGTTCTCGTTAGATGCGAAGAAATTTGCATCTCCGGCGGTCTCGTTAGACAGAAGATGAAGTACATGCGGTTCCTTCGTAAGCGTATGAACACCAAACCCTCTCACGGTCCTATTCACTTCCGCGCTCCATCCAAGATCTTCTGGCGCACTGTTCGTGGAATGATTCCACACAAGACAAAGCGCGGAGAAGCTGCACTTGCTAGATTGAAAGTATATGAGGGAATTCCCCCACCATATGACAAGATCAAAAGGATGGTGGTACCTGATGCACTCAAGGTGTTGAGGCTTCAGAAGGGCCACAAATACTGCTTGCTTGGGCAGTTGTCATCTGAGGTCGGATGGAATTATTACGACACCATCAAGGAGTTGGAGAAGAAGAGGAAGGAACGAGCTCATTTGAATTATGAGAAGAAGAAGCTCCTCAATAAATTGAGGACTAAAGCCGAGAAGATTGTTGATGAGAAACTTGCTCCACAACTTGAAATTCTTGCTCCAGTCAAGTACTGA 621 0.4847 MVSGSGACAKRVVVDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERAHLNYEKKKLLNKLRTKAEKIVDEKLAPQLEILAPVKY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05874 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vivi4g05874 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi4g05874 206 Gene3D - 156 206 - -
Vivi4g05874 206 FunFam 60S ribosomal protein L13a 155 206 - -
Vivi4g05874 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi4g05874 206 PANTHER RIBOSOMAL PROTEIN L13 3 186 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi4g05874 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Vivi4g05874 206 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vivi4g05874 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi4g05874 206 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi4g05874 206 Coils Coil 161 181 - -
Vivi4g05874 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05874 Vivi-Chr4 195465068 195466671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05874 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.350 4.56e-137 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05874 K02872 - gmx:100813340 381.333