Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05873 ATGTCATCCGCCACATCGTGTCTCCTCTTCTTCTTCCTCCTTCCTCTTCTCATAACCACCATCATATCTCCGGTAGCCTCTGCCGGTAAAGGCCAATGGCAGCTACTACAAAAAAACATCGGCATTGTAGCCATGCACATGCAACTCCTTCACAACGACCGCCTAGTCATATTCGACCGGACCGACTTCGGTCTCTCCAACCTTACCCTCCCCAACGGGAAATGTCGTAACGACCCGACAGAAACCACCGTTAAAATCGATTGCACGGCGCATTCCGTCGAATACAACATCGCATCCAACACTTTCCGTCCGCTGTTTGTTCAAACCGATGTTTGGTGTTCTTCCGGCGGGGTGAACCCGGCCGGAACACTTGTCCAAACAGGAGGTTTCAATGACGGAGACCGCACAGTTCGAATCTTTGAACCTTGTAATGACTGTGATTGGCGGGAAATCCCCGGCGGACTTACTGCCCGGAGATGGTATGCTACTAATCATATTCTGCCGGACGGCCGTCAGATTGTCATCGGCGGTAGAAGACAATTTAACTATGAATTTTACCCCAAAAACAACATTGGTGCAGTAAATTTATATAGTTTACAATTTTTGGTTCAAACTAATGAAGTTGGTGCAGAGAATAACTTGTACCCTTTTGTTTTTCTCAATGTTGATGGCAACCTCTTCATCTTTGCTAACAACAGAGCCATCCTCTTCGATTACAATAAGAATCGAGTGGTGAAAACATTTCCACAAGTACCAGGTGGAGATCCTAGGAGTTATCCAAGCACAGGTTCAAGTGTTTTGTTACCATTAAAAAATCTTCAATCAAGAGCAATTGAAGCTGAGGTTTTGATTTGTGGTGGAGCACCAAAAGGATCATATCAAAGCGCAGAAAGAAAACAATTTCTCGGAGCTTTGAATACTTGTGCCCGAATCAAAATAACCGACCCGGAACCGGAATGGGTAGTTGAAACCATGCCAGAAGGAAGAGTCATGGGTGATATGGTAATCCTTCCAAACGGTGACGTTTTGATAATTAACGGAGCTGGTTCAGGTACAGCCGGTTGGGAACTTGGACGCGAACCGGTTTTGAACCCGGTTCTTTATAAAACAAATAACCCAACCGGTGCACGGTTCGAGTCACAAACCCCGTCTAACATACCTCGAATGTATCATTCTACTGCTGTTTTGGTTCGTGATGGAAGGGTTATTATCGGTGGTAGTAACCCTCACGTTGGTTATAGTTTTGGTAATGTTTTGTTTCCAACTGAACTTAGTCTTGAAGCTTTTTCACCTTCTTATCTCGAACCGGGTTTTGCAAATGTTCGTCCGAGGATTGTGTCTCCTATTCCAGGGGCACAAAAGTATGGTCAAAAGTTGAATTTGAGGTTTCAGGTGAAAGCAACGTTGGATGAGAATTTGGTTTATGTTACACTGTTGGCGCCGTCTTTTAACACACATTCGTTTTCGATGAATCAGAGGTTGTTGGTGTTGGACTCAAATAAAGTGGTTAAGGTAGGAGCAGCGTTTGAAATTGAGGTTACTGTACCTGGTTCACCTGTTCTTGCACCTCCTGGATTTTATATGTTATTTGTGGTTCATAAGGAAATTCCCAGTGAAGGTGTTTGGGTACATATAGTTTGA 1641 0.4424 MSSATSCLLFFFLLPLLITTIISPVASAGKGQWQLLQKNIGIVAMHMQLLHNDRLVIFDRTDFGLSNLTLPNGKCRNDPTETTVKIDCTAHSVEYNIASNTFRPLFVQTDVWCSSGGVNPAGTLVQTGGFNDGDRTVRIFEPCNDCDWREIPGGLTARRWYATNHILPDGRQIVIGGRRQFNYEFYPKNNIGAVNLYSLQFLVQTNEVGAENNLYPFVFLNVDGNLFIFANNRAILFDYNKNRVVKTFPQVPGGDPRSYPSTGSSVLLPLKNLQSRAIEAEVLICGGAPKGSYQSAERKQFLGALNTCARIKITDPEPEWVVETMPEGRVMGDMVILPNGDVLIINGAGSGTAGWELGREPVLNPVLYKTNNPTGARFESQTPSNIPRMYHSTAVLVRDGRVIIGGSNPHVGYSFGNVLFPTELSLEAFSPSYLEPGFANVRPRIVSPIPGAQKYGQKLNLRFQVKATLDENLVYVTLLAPSFNTHSFSMNQRLLVLDSNKVVKVGAAFEIEVTVPGSPVLAPPGFYMLFVVHKEIPSEGVWVHIV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05873 546 SUPERFAMILY Galactose oxidase, central domain 93 435 IPR011043 -
Vivi4g05873 546 PANTHER SECRETED PROTEIN-RELATED 12 545 - -
Vivi4g05873 546 CDD E_set_GO_C 437 545 IPR015202 -
Vivi4g05873 546 Pfam Galactose oxidase-like, Early set domain 442 545 IPR015202 -
Vivi4g05873 546 Gene3D Immunoglobulins 441 546 IPR013783 -
Vivi4g05873 546 Gene3D - 27 437 IPR037293 -
Vivi4g05873 546 Pfam Glyoxal oxidase N-terminus 45 287 IPR009880 -
Vivi4g05873 546 FunFam Aldehyde oxidase GLOX 27 440 - -
Vivi4g05873 546 SUPERFAMILY E set domains 439 545 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05873 Vivi-Chr4 195453102 195455472 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05873 - - gmx:100816842 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05873 4 195453102 195455472 Vivi4g05873 4 195453102 195455472 ECH
Vivi4g05873 4 195453102 195455472 Vivi4g05872 4 195398324 195400479 PCT
Vivi4g05873 4 195453102 195455472 Vivi4g05873 4 195453102 195455472 PCT