Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05872 ATGACTACCACCACCACCACTGCCACCACCTGTTTCCTCTTCTTCCTTCTTCCTCTTCTCATAACCACCATCATATCTCCGGTAGCCTCTGCCGGTAAAGGACAATGGCAGCTACTACAAAAAAACATCGGCGTTGTAGCCATGCACATGCAACTCCTTCACAACGACAGACTAATCATATTCGACCGGACTGACTTCGGTCGTTCCAACATTTCTCTACCGGATGGAAAGTGTCGTAATGACCCAAAAGAAGCCGTCGTTAAAACTGATTGCACTGCCCATTCAGTCGAATACAATGTCATATCCAACACTTTCCGTCCATTGTTTGTTCAAACAGATGTTTGGTGTTCTTCTGGTGGGGTGAACCCGTCCGGAACACTAGTCCAAACAGGTGGTTTCAATGACGGTAACCGCACCATTCGAACCTTTGAACCTTGTAATAACTGTGATTGGCAGGAATTTGACAGCGAACTTCTTGCTTCGAGATGGTATGCTACTAATCATATTCTGCCGGACGGAAGTCAAATTATCATCGGCGGTAGAAGACAATTTAACTATGAATTTTATCCCAAAAACAACATTGGTGCAAAAAAATTATATAGTTTGCCATTTTTGGCACAAACTAATGACCTTGGTACAGAGAATAATTTGTACCCTTTTGTTTTTCTCAATGTTGATGGCCACCTCTTCATCTTTGCTAACAATAGAGCCATCCTCTTCGATTATAATAAGAATCAAGTGGTGAAAACATTTCCACAAGTACCAGGTGGAGATCCTAGGAGTTATCCAAGCACAGGTTCTAGTGTTTTGTTACCATTAAAAAATCTTCAATCAAGAGCTATAGAAGCTGAAGTTTTGGTTTGTGGTGGAGCACCAAAAGGATCATATCAAAGAGCCGTAAAAAAAGAATTTCTCGGAGCTTTGAATACGTGTGCCCGAATCAAAATAACCGACCCGGAACCGGAATGGGTAGTTGAAACCATGCCAGAAGGTAGAGTCATGAGTGATATGGTAATCCTTCCAAACGGTGACGTTTTGATAATTAACGGAGCTGGTTCAGGTACAGCCGGTTGGGAAATCGGACGGGAACCGGTTTTGAACCCGGTTCTTTATAAAACAAAAAACCGAACCGGTTCACGGTTCGAGTCACAAAACCCGTCTAATACACCACGAATGTATCATTCTAGTGCTGTTTTGGTTCGTGATGGAAGGGTTATTATTGGTGGTAGTAACCCTCACTTTGGTTATAGTTTTGGTAATGTTTTGTTTCCAACTGAACTTAGTCTTGAAGCTTTTTCACCTTCTTATCTTGAACCGGGTTTCTCGAATGTTCGTCCGAGGATTGTGTCTTCTATTATAGGGTCACAAAAGTATGGTCAAAAGTTGAAGTTGAGGTTTCAGGTGAAAACAAAGTTGGATCAGAATTTGGTTTATGTTACAATGTTGGCGCCGTCTTTTAACACACATTCCTTTTCGATGAATCAGAGGTTGTTGGTGTTGGACTCAAATAAAGTGGTTAAGGTGAAAAAAACAACGTTTGAAATTGTGGTTTCTATGCCTGGTTCATCTGTTCTTGCACCTCCTGGTTTTTATATGTTATTTGTGGTTCATAAAGAAATTCCTAGTGAAGGTGTTTGGGTACATATAGTTTGA 1653 0.412 MTTTTTTATTCFLFFLLPLLITTIISPVASAGKGQWQLLQKNIGVVAMHMQLLHNDRLIIFDRTDFGRSNISLPDGKCRNDPKEAVVKTDCTAHSVEYNVISNTFRPLFVQTDVWCSSGGVNPSGTLVQTGGFNDGNRTIRTFEPCNNCDWQEFDSELLASRWYATNHILPDGSQIIIGGRRQFNYEFYPKNNIGAKKLYSLPFLAQTNDLGTENNLYPFVFLNVDGHLFIFANNRAILFDYNKNQVVKTFPQVPGGDPRSYPSTGSSVLLPLKNLQSRAIEAEVLVCGGAPKGSYQRAVKKEFLGALNTCARIKITDPEPEWVVETMPEGRVMSDMVILPNGDVLIINGAGSGTAGWEIGREPVLNPVLYKTKNRTGSRFESQNPSNTPRMYHSSAVLVRDGRVIIGGSNPHFGYSFGNVLFPTELSLEAFSPSYLEPGFSNVRPRIVSSIIGSQKYGQKLKLRFQVKTKLDQNLVYVTMLAPSFNTHSFSMNQRLLVLDSNKVVKVKKTTFEIVVSMPGSSVLAPPGFYMLFVVHKEIPSEGVWVHIV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05872 550 CDD E_set_GO_C 440 549 IPR015202 -
Vivi4g05872 550 Pfam Galactose oxidase-like, Early set domain 445 549 IPR015202 -
Vivi4g05872 550 Gene3D Immunoglobulins 444 550 IPR013783 -
Vivi4g05872 550 SUPERFAMILY Galactose oxidase, central domain 96 438 IPR011043 -
Vivi4g05872 550 SUPERFAMILY E set domains 441 549 IPR014756 -
Vivi4g05872 550 Gene3D - 30 440 IPR037293 -
Vivi4g05872 550 FunFam Aldehyde oxidase GLOX 30 443 - -
Vivi4g05872 550 PANTHER SECRETED PROTEIN-RELATED 15 549 - -
Vivi4g05872 550 Pfam Glyoxal oxidase N-terminus 48 290 IPR009880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05872 Vivi-Chr4 195398324 195400479 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05872 - - gmx:100816842 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05873 4 195453102 195455472 Vivi4g05872 4 195398324 195400479 PCT