Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05864 ATGAACACAATTCGATCCCGTTTCTCAGCTAAAATGGCGGCAGAAAACACCGGAAAAAACAACCTCGAATCTGGCGGTTTCTGGCCGTTTCTCCGCCGTTGGATCCCCACTTCTACCGACCACATCATCAATGCCGAGAAACGCCTTCTCTCTCTTGTCAAGACTCCGTATGTTCAAGAGCAGGTGAATATTGGTTCTGGTCCACCTGATTCCAGAGTGAGGTGGTTTCGTTCATCTAGCAATGAACCGAGGTTTATCAACACTGTTACCTTTGATGGTAAAGAGGATTCTCCTACATTGGTAATGATTCATGGATATGCTGCATCACAGGGTTTCTTCTTTCGCAATTTTGATGCACTTGCTTCGCGTTTTAGAGTCGTCGCTATTGATCAACTTGGTTGGGGTGGATCTAGCAGGCCAGACTTTACATGCAAAAGCACTGAAGAAACCGAGGCATGGTTCATTGATTCTTTTGAGGAATGGAGGAAAGCGAAAAATCTAAGCAATTTTATACTTCTTGGTCATTCTTTTGGGGGTTATATAGCTTCCAAATATGCACTTAAGCACCCAGAGCACGTACAACACTTGGTTTTGGTGGGATCTGCTGGATTTTCATCAGAAACTGAGAGGATTACAAAATTTTTATCAACATGGAAAGGATCAATTCTGAACCAAATATGGGAATCCAATTTAACACCTCAAACAATTATCAGAGGTTTAGGTCCTTGGGGTCCTGATTTAGTCCATAGGTATACAAGTGCTAGGTTTGTCAAATACTCAACTGGGGAACTGTTGACCGAATCTGAATCGAGATTACTAACAGATTATGTTTATCATACGCTAGCAGCCAAAGCTAGTGGTGAGTTGTGTTTAAAATATATTTTTTCATTTGGAGCATTTGCCAAGTCACCTCTTCTACACAGCGCCTCAGAGTGGAAAGTGCCTACCACTTTCATCTATGGTTTTAACGACTGGATGAATTACGAAGGGGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGTGAGATCATCAGGGTTCCACAGGCCGGGCATTTTGTGTTCATTGAAAACCCATCGGCCTTCCATTCGGCTGTGTTCTATGCTTGTAGAAGGTTTCTCCGTCCTGATCCTGACAGTGAATCCCTTCCTGAAGGGCTAACATCTGCATAG 1173 0.4339 MNTIRSRFSAKMAAENTGKNNLESGGFWPFLRRWIPTSTDHIINAEKRLLSLVKTPYVQEQVNIGSGPPDSRVRWFRSSSNEPRFINTVTFDGKEDSPTLVMIHGYAASQGFFFRNFDALASRFRVVAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYIASKYALKHPEHVQHLVLVGSAGFSSETERITKFLSTWKGSILNQIWESNLTPQTIIRGLGPWGPDLVHRYTSARFVKYSTGELLTESESRLLTDYVYHTLAAKASGELCLKYIFSFGAFAKSPLLHSASEWKVPTTFIYGFNDWMNYEGAQEARKHMKVPCEIIRVPQAGHFVFIENPSAFHSAVFYACRRFLRPDPDSESLPEGLTSA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05864 390 PANTHER RE40534P-RELATED 33 367 - -
Vivi4g05864 390 Gene3D alpha/beta hydrolase 84 370 IPR029058 -
Vivi4g05864 390 SUPERFAMILY alpha/beta-Hydrolases 89 366 IPR029058 -
Vivi4g05864 390 Pfam alpha/beta hydrolase fold 98 210 IPR000073 -
Vivi4g05864 390 FunFam Probable 1-acylglycerol-3-phosphate O-acyltransferase 84 370 - -
Vivi4g05864 390 PRINTS Epoxide hydrolase signature 186 199 IPR000639 GO:0003824
Vivi4g05864 390 PRINTS Epoxide hydrolase signature 347 369 IPR000639 GO:0003824
Vivi4g05864 390 PRINTS Epoxide hydrolase signature 123 138 IPR000639 GO:0003824
Vivi4g05864 390 PRINTS Epoxide hydrolase signature 172 185 IPR000639 GO:0003824
Vivi4g05864 390 PRINTS Epoxide hydrolase signature 314 330 IPR000639 GO:0003824
Vivi4g05864 390 PRINTS Alpha/beta hydrolase fold signature 123 138 IPR000073 -
Vivi4g05864 390 PRINTS Alpha/beta hydrolase fold signature 186 199 IPR000073 -
Vivi4g05864 390 PRINTS Alpha/beta hydrolase fold signature 172 185 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05864 Vivi-Chr4 195305210 195310934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05864 78 205 Acyl Lipid Metabolism Gene Families AT1G64670 32.847 5.51e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05864 - - gmx:100789925 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05864 4 195305210 195310934 Vivi4g05864 4 195305210 195310934 ECH
Vivi4g05864 4 195305210 195310934 Vivi3g00563 3 9419666 9423532 PCT