Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05860 ATGGCAGGTTTCTTCTCTCTAAGCAGTGGAAGAGGAAAAGAAGAAGCTAGAGAGCAAGAAGAAAATAATAATAACAGTGGAAACACTAATAATAATCAGTTTCTCTTCCGAAACGAAGAGATCTACAACAAAGGATTCGAGATATGGCCGCAACCACAACCACATCAAACTTCTTTTCATCATCAACAAAATCTTAACAACTTTTACTCCTTCGGTGTCGGAGGTGGAGGTAGTACTAGTCGAAGAAACGAAAACAATTTAAACGACGACGTTTCCGTTTCGTTTTCTGATGAATCAACTAGATTTGGATTAACAGTGATGAGGTCTTCCGGCAGTGGTTTAAGCGGCGGCGGAATGAACTGTCAAGATTGCGGCAACCAAGCGAAGAAAGACTGTCCTCATCTTAGATGCAGAACTTGTTGCAAGAGTCGAGGGTTTCAGTGTCAAACTCATGTGAAAAGTACTTGGGTTCCCGCCGCGAAACGCCGTGAACGGCAGCATCAGCTTTCATCTTTGCAGCAACAAAATCAGCAACAGCAACAGTTTCATTCTTCAAGACGACACAGAGAAAATCCAAACGAATCTTCTGCAGCAGGAGCTTCTGGTTCTCTTGCTTGTACTCCAATACCTATCACTACAACAGGGTTGGAGCTGGGGAATTTTCCACCGGAGCTGAATTCACCGGCGGTGTTCCGGTGTGTGAAGGTGAGTGCAATGGATGCACAAGACGAGCGTTACGCTTATCAAACTGCTGTGAACATAGGCGGACGAGTTTTCAAGGGAATTCTCTATGATCAAGGACTTGAAGTTAATTACACTAGTGCAAATGCCGGTGGTGAGGGTTCTTCTGGCGGTGGTGGCGGCGGCGGTGAAGGAAATCAACAGAATCTGATAACAACCACCGCAACAAATGTTAACAATCCATTTGAATACTCATCTCTTTATCCAGCTCCTCTTAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCGAGATCCTAA 1005 0.4468 MAGFFSLSSGRGKEEAREQEENNNNSGNTNNNQFLFRNEEIYNKGFEIWPQPQPHQTSFHHQQNLNNFYSFGVGGGGSTSRRNENNLNDDVSVSFSDESTRFGLTVMRSSGSGLSGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQHQLSSLQQQNQQQQQFHSSRRHRENPNESSAAGASGSLACTPIPITTTGLELGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLEVNYTSANAGGEGSSGGGGGGGEGNQQNLITTTATNVNNPFEYSSLYPAPLNAFMAGTQFFPPPRS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05860 334 MobiDBLite consensus disorder prediction 161 205 - -
Vivi4g05860 334 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Vivi4g05860 334 Pfam Domain of unknown function (DUF702) 118 269 - -
Vivi4g05860 334 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g05860 334 MobiDBLite consensus disorder prediction 70 92 - -
Vivi4g05860 334 NCBIfam LRP1 C-terminal domain 221 268 IPR006511 -
Vivi4g05860 334 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 320 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05860 Vivi-Chr4 195182975 195184918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05860 1 334 C2H2 Transcription Factor Family AT1G75520 45.652 6.84e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi4g05860 DUF702 5.9e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05860 - - psat:127097211 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05860 4 195182975 195184918 Vivi3g00536 3 9050673 9052027 PCT